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PDB: 110 results

7TWA
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BU of 7twa by Molmil
Crystal structure of apo BesC from Streptomyces cattleya
Descriptor: 1,3-BUTANEDIOL, 4-chloro-allylglycine synthase, ACETATE ION, ...
Authors:Neugebauer, M.E, McBride, M.J, Boal, A.K, Chang, M.C.Y.
Deposit date:2022-02-07
Release date:2022-04-13
Last modified:2022-04-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Substrate-Triggered mu-Peroxodiiron(III) Intermediate in the 4-Chloro-l-Lysine-Fragmenting Heme-Oxygenase-like Diiron Oxidase (HDO) BesC: Substrate Dissociation from, and C4 Targeting by, the Intermediate.
Biochemistry, 61, 2022
8RVE
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BU of 8rve by Molmil
Vimentin intermediate filament
Descriptor: Vimentin
Authors:Eibauer, M, Medalia, O.
Deposit date:2024-02-01
Release date:2024-04-10
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Vimentin filaments integrate low-complexity domains in a complex helical structure.
Nat.Struct.Mol.Biol., 31, 2024
6NIE
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BU of 6nie by Molmil
BesD with Fe(II), chloride, and alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, BesD, lysine halogenase, ...
Authors:Neugebauer, M.E, Chang, M.C.Y.
Deposit date:2018-12-27
Release date:2019-10-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A family of radical halogenases for the engineering of amino-acid-based products.
Nat.Chem.Biol., 15, 2019
7U6I
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BU of 7u6i by Molmil
HalB with glycine and succinate
Descriptor: GLYCEROL, GLYCINE, Halogenase B, ...
Authors:Neugebauer, M.E, Kissman, E.N, Chang, M.C.Y.
Deposit date:2022-03-04
Release date:2023-03-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Biocatalytic control of site-selectivity and chain length-selectivity in radical amino acid halogenases.
Proc.Natl.Acad.Sci.USA, 120, 2023
7M55
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BU of 7m55 by Molmil
B6 Fab fragment bound to the MERS-CoV spike stem helix peptide
Descriptor: B6 antigen binding fragment (Fab) heavy chain, B6 antigen binding fragment (Fab) light chain, GLYCEROL, ...
Authors:Sauer, M.M, Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-03-22
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis for broad coronavirus neutralization.
Nat.Struct.Mol.Biol., 28, 2021
7M5E
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BU of 7m5e by Molmil
MERS-CoV S bound to the broadly neutralizing B6 Fab fragment (C3 refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FOLIC ACID, ...
Authors:Sauer, M.M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-03-23
Release date:2021-05-26
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for broad coronavirus neutralization.
Nat.Struct.Mol.Biol., 28, 2021
7M53
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BU of 7m53 by Molmil
B6 Fab fragment bound to the SARS-CoV/SARS-CoV-2 spike stem helix peptide
Descriptor: B6 antigen-binding (Fab) fragment heavy chain, B6 antigen-binding (Fab) fragment light chain, GLYCEROL, ...
Authors:Sauer, M.M, Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-03-22
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis for broad coronavirus neutralization.
Nat.Struct.Mol.Biol., 28, 2021
7M51
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BU of 7m51 by Molmil
B6 Fab fragment bound to the OC43 spike stem helix peptide
Descriptor: B6 antigen-binding (Fab) fragment heavy chain, B6 antigen-binding (Fab) fragment light chain, GLYCEROL, ...
Authors:Sauer, M.M, Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-03-22
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for broad coronavirus neutralization.
Nat.Struct.Mol.Biol., 28, 2021
7M52
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BU of 7m52 by Molmil
B6 Fab fragment bound to the HKU4 spike stem helix peptide
Descriptor: B6 antigen-binding (Fab) fragment heavy chain, B6 antigen-binding (Fab) fragment light chain, GLYCEROL, ...
Authors:Sauer, M.M, Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-03-22
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis for broad coronavirus neutralization.
Nat.Struct.Mol.Biol., 28, 2021
7ZXV
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BU of 7zxv by Molmil
Orange Carotenoid Protein Trp-288 BTA mutant
Descriptor: CHLORIDE ION, Orange carotenoid-binding protein, beta,beta-caroten-4-one, ...
Authors:Moldenhauer, M, Tseng, H.-W, Kraskov, A, Tavraz, N.N, Hildebrandt, P, Hochberg, G, Essen, L.-O, Budisa, N, Korf, L, Maksimov, E.G, Friedrich, T.
Deposit date:2022-05-23
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Parameterization of a single H-bond in Orange Carotenoid Protein by atomic mutation reveals principles of evolutionary design of complex chemical photosystems.
Front Mol Biosci, 10, 2023
1NPL
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BU of 1npl by Molmil
MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM DAFFODIL (NARCISSUS PSEUDONARCISSUS) BULBS IN COMPLEX WITH MANNOSE-ALPHA1,3-MANNOSE
Descriptor: PHOSPHATE ION, PROTEIN (AGGLUTININ), alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose
Authors:Sauerborn, M.K, Wright, L.M, Reynolds, C.D, Grossmann, J.G, Rizkallah, P.J.
Deposit date:1998-12-17
Release date:1998-12-23
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights into carbohydrate recognition by Narcissus pseudonarcissus lectin: the crystal structure at 2 A resolution in complex with alpha1-3 mannobiose.
J.Mol.Biol., 290, 1999
1YYH
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BU of 1yyh by Molmil
Crystal structure of the human Notch 1 ankyrin domain
Descriptor: Notch 1, ankyrin domain
Authors:Ehebauer, M.T, Chirgadze, D.Y, Hayward, P, Martinez-Arias, A, Blundell, T.L.
Deposit date:2005-02-25
Release date:2005-08-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:High-resolution crystal structure of the human Notch 1 ankyrin domain
Biochem.J., 392, 2005
1ROD
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BU of 1rod by Molmil
CHIMERIC PROTEIN OF INTERLEUKIN 8 AND HUMAN MELANOMA GROWTH STIMULATING ACTIVITY PROTEIN, NMR
Descriptor: CHIMERIC PROTEIN OF INTERLEUKIN 8 AND HUMAN MELANOMA GROWTH STIMULATING ACTIVITY PROTEIN
Authors:Roesch, P, Sticht, H, Auer, M, Schmitt, B, Besemer, J, Horcher, M, Kirsch, T, Lindley, I.J.D.
Deposit date:1995-11-24
Release date:1996-06-10
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structure and activity of a chimeric interleukin-8-melanoma-growth-stimulatory-activity protein.
Eur.J.Biochem., 235, 1996
1PW4
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BU of 1pw4 by Molmil
Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Descriptor: Glycerol-3-phosphate transporter
Authors:Huang, Y, Lemieux, M.J, Song, J, Auer, M, Wang, D.N.
Deposit date:2003-06-30
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and Mechanism of the Glycerol-3-Phosphate Transporter from Escherichia Coli
Science, 301, 2003
1QLB
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BU of 1qlb by Molmil
respiratory complex II-like fumarate reductase from Wolinella succinogenes
Descriptor: CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Lancaster, C.R.D, Kroeger, A, Auer, M, Michel, H.
Deposit date:1999-08-25
Release date:1999-11-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structure of Fumarate Reductase from Wolinella Succinogenes at 2.2 Angstroms Resolution
Nature, 402, 1999
1A8G
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BU of 1a8g by Molmil
HIV-1 PROTEASE IN COMPLEX WITH SDZ283-910
Descriptor: HIV-1 PROTEASE, benzyl [(1R)-1-({(1S,2S,3S)-1-benzyl-2-hydroxy-4-({(1S)-1-[(2-hydroxy-4-methoxybenzyl)carbamoyl]-2-methylpropyl}amino)-3-[(4-methoxybenzyl)amino]-4-oxobutyl}carbamoyl)-2,2-dimethylpropyl]carbamate
Authors:Kallen, J, Billich, A, Scholz, D, Auer, M, Kungl, A.
Deposit date:1998-03-24
Release date:1998-07-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure and conformational dynamics of the HIV-1 protease in complex with the inhibitor SDZ283-910: agreement of time-resolved spectroscopy and molecular dynamics simulations.
J.Mol.Biol., 286, 1999
6PFK
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BU of 6pfk by Molmil
PHOSPHOFRUCTOKINASE, INHIBITED T-STATE
Descriptor: 2-PHOSPHOGLYCOLIC ACID, PHOSPHOFRUCTOKINASE
Authors:Evans, P.R, Schirmer, T, Auer, M.
Deposit date:1996-01-04
Release date:1996-07-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of the allosteric behaviour of phosphofructokinase.
Nature, 343, 1990
4UQO
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BU of 4uqo by Molmil
RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA REPAIR AND RECOMBINATION PROTEIN RADA, MAGNESIUM ION, ...
Authors:Marsh, M.E, Ehebauer, M.T, Scott, D, Abell, C, Blundell, T.L, Hyvonen, M.
Deposit date:2014-06-24
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:ATP Half-Sites in Rada and Rad51 Recombinases Bind Nucleotides
FEBS Open Bio, 6, 2016
4GH7
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BU of 4gh7 by Molmil
Crystal structure of Anticalin N7A in complex with oncofetal fibronectin fragment Fn7B8
Descriptor: Fibronectin, Neutrophil gelatinase-associated lipocalin
Authors:Schiefner, A, Gebauer, M, Skerra, A.
Deposit date:2012-08-07
Release date:2012-12-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Combinatorial design of an Anticalin directed against the extra-domain b for the specific targeting of oncofetal fibronectin
J.Mol.Biol., 425, 2013
2HE0
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BU of 2he0 by Molmil
Crystal structure of a human Notch1 ankyrin domain mutant
Descriptor: 1,2-ETHANEDIOL, Notch1 preproprotein variant
Authors:Gupta, D, Ehebauer, M.T, Chirgadze, D.Y, Martinez Arias, A, Blundell, T.L.
Deposit date:2006-06-21
Release date:2006-07-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a human Notch1 ankyrin domain mutant
TO BE PUBLISHED
7RNJ
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BU of 7rnj by Molmil
S2P6 Fab fragment bound to the SARS-CoV/SARS-CoV-2 spike stem helix peptide
Descriptor: Monoclonal antibody S2P6 Fab heavy chain, Monoclonal antibody S2P6 Fab light chain, SULFATE ION, ...
Authors:Snell, G, Czudnochowski, N, Croll, T.I, Nix, J.C, Corti, D, Cameroni, E, Pinto, D, Beltramello, M, Sauer, M.M, Veesler, D.
Deposit date:2021-07-29
Release date:2021-08-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Broad betacoronavirus neutralization by a stem helix-specific human antibody.
Science, 373, 2021
7NM5
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BU of 7nm5 by Molmil
Solution structure of MLKL executioner domain in complex with a fragment
Descriptor: 2-[(~{S})-methoxy-(4-phenylphenyl)methyl]-3~{H}-benzimidazole-5-carboxylic acid, Mixed lineage kinase domain-like protein
Authors:Ruebbelke, M, Bauer, M, Hamilton, J, Binder, F, Nar, H, Zeeb, M.
Deposit date:2021-02-23
Release date:2021-09-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Discovery and Structure-Based Optimization of Fragments Binding the Mixed Lineage Kinase Domain-like Protein Executioner Domain.
J.Med.Chem., 64, 2021
7NM2
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BU of 7nm2 by Molmil
Solution structure of MLKL executioner domain in complex with a fragment
Descriptor: 2-[(~{S})-methoxy-(4-propan-2-ylphenyl)methyl]-3~{H}-benzimidazole-5-carboxylic acid, Mixed lineage kinase domain-like protein
Authors:Ruebbelke, M, Bauer, M, Hamilton, J, Binder, F, Nar, H, Zeeb, M.
Deposit date:2021-02-23
Release date:2021-09-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Discovery and Structure-Based Optimization of Fragments Binding the Mixed Lineage Kinase Domain-like Protein Executioner Domain.
J.Med.Chem., 64, 2021
7NM4
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BU of 7nm4 by Molmil
Solution structure of MLKL executioner domain in complex with a fragment
Descriptor: (~{S})-1~{H}-benzimidazol-2-yl-(4-propan-2-ylphenyl)methanol, Mixed lineage kinase domain-like protein
Authors:Ruebbelke, M, Bauer, M, Hamilton, J, Binder, F, Nar, H, Zeeb, M.
Deposit date:2021-02-23
Release date:2021-09-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Discovery and Structure-Based Optimization of Fragments Binding the Mixed Lineage Kinase Domain-like Protein Executioner Domain.
J.Med.Chem., 64, 2021
6Z0C
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BU of 6z0c by Molmil
Structure of in silico modelled artificial Maquette-3 protein
Descriptor: Maquette-3, POTASSIUM ION
Authors:Baumgart, M, Roepke, M, Muehlbauer, M.E, Asami, S, Mader, S.L, Fredriksson, K, Groll, M, Gamiz-Hernandez, A.P, Kaila, V.R.I.
Deposit date:2020-05-08
Release date:2021-03-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design of buried charged networks in artificial proteins
Nat Commun, 12, 2021

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