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PDB: 1210 results

4N8W
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cathepsin K - chondroitin sulfate complex
Descriptor: 2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranuronic acid, Cathepsin K
Authors:Aguda, A.H, Nguyen, N.T, Bromme, D, Brayer, G.D.
Deposit date:2013-10-18
Release date:2014-11-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis of collagen fiber degradation by cathepsin K.
Proc.Natl.Acad.Sci.USA, 111, 2014
4MT2
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COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE X-RAY CRYSTAL STRUCTURE OF RAT METALLOTHIONEIN-2
Descriptor: CADMIUM ION, METALLOTHIONEIN ISOFORM II, SODIUM ION, ...
Authors:Robbins, A.H, Stout, C.D.
Deposit date:1993-02-26
Release date:1993-07-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Comparison of the NMR solution structure and the x-ray crystal structure of rat metallothionein-2.
Proc.Natl.Acad.Sci.USA, 89, 1992
4Q30
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Nitrowillardiine bound to the ligand binding domain of GluA2 at pH 3.5
Descriptor: 3-(5-nitro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine, Glutamate receptor 2 CHIMERIC PROTEIN, ZINC ION
Authors:Ahmed, A.H, Oswald, R.E.
Deposit date:2014-04-10
Release date:2014-06-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Thermodynamics and mechanism of the interaction of willardiine partial agonists with a glutamate receptor: implications for drug development.
Biochemistry, 53, 2014
4QIG
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Crystal Structure of PduA with edge mutation K26A and pore mutation S40C
Descriptor: Propanediol utilization protein PduA, SULFATE ION
Authors:Pang, A.H, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-05-30
Release date:2015-02-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.297 Å)
Cite:Selective molecular transport through the protein shell of a bacterial microcompartment organelle.
Proc.Natl.Acad.Sci.USA, 112, 2015
4QIV
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Crystal structure of hexameric microcomparment shell protein from Aeromonas hydrophila
Descriptor: Bacterial microcompartments family protein
Authors:Pang, A.H, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-06-02
Release date:2015-08-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a hexameric microcomparment protein from Aeromonas hydrophila
To be Published
4KPC
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BU of 4kpc by Molmil
Crystal structure of the nucleoside diphosphate kinase b from Leishmania braziliensis
Descriptor: Nucleoside diphosphate kinase b, PHOSPHATE ION
Authors:Vieira, P.S, Giuseppe, P.O, Santos, C.R, Cunha, E.M.F, de Oliveira, A.H.C, Murakami, M.T.
Deposit date:2013-05-13
Release date:2014-07-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and biophysical characterization of the nucleoside diphosphate kinase from Leishmania braziliensis.
Bmc Struct.Biol., 15, 2015
4KT8
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The complex structure of Rv3378c-Y51FY90F with substrate, TPP
Descriptor: (2E)-3-methyl-5-[(1R,2S,8aS)-1,2,5,5-tetramethyl-1,2,3,5,6,7,8,8a-octahydronaphthalen-1-yl]pent-2-en-1-yl trihydrogen diphosphate, Diterpene synthase, PHOSPHATE ION
Authors:Chan, H.C, Feng, X, Ko, T.P, Huang, C.H, Hu, Y, Zheng, Y, Bogue, S, Nakano, C, Hoshino, T, Zhang, L, Lv, P, Liu, W, Crick, D.C, Liang, P.H, Wang, A.H, Oldfield, E, Guo, R.T.
Deposit date:2013-05-20
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and inhibition of tuberculosinol synthase and decaprenyl diphosphate synthase from Mycobacterium tuberculosis.
J.Am.Chem.Soc., 136, 2014
4QI1
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Crystal structure of H. walsbyi bacteriorhodopsin
Descriptor: Bacteriorhodopsin-I, GLYCEROL, RETINAL, ...
Authors:Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y.
Deposit date:2014-05-30
Release date:2015-07-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity.
J. Biol. Chem., 290, 2015
4QID
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Crystal structure of Haloquadratum walsbyi bacteriorhodopsin
Descriptor: ACETATE ION, Bacteriorhodopsin-I, RETINAL, ...
Authors:Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y.
Deposit date:2014-05-30
Release date:2015-07-29
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:An acid-tolerant light-driven proton pump
To be Published
4K7J
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Peptidoglycan O-acetylesterase in action, 5 min
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, GDSL-like Lipase/Acylhydrolase family protein
Authors:Williams, A.H, Gomperts Boneca, I.
Deposit date:2013-04-17
Release date:2014-09-03
Last modified:2014-10-22
Method:X-RAY DIFFRACTION (1.968 Å)
Cite:Visualization of a substrate-induced productive conformation of the catalytic triad of the Neisseria meningitidis peptidoglycan O-acetylesterase reveals mechanistic conservation in SGNH esterase family members.
Acta Crystallogr.,Sect.D, 70, 2014
4K3U
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Peptidoglycan O-acetylesterase in action, 30 min
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GDSL-like Lipase/Acylhydrolase family protein
Authors:Williams, A.H, Gomperts Boneca, I.
Deposit date:2013-04-11
Release date:2014-09-03
Last modified:2014-10-22
Method:X-RAY DIFFRACTION (2.158 Å)
Cite:Visualization of a substrate-induced productive conformation of the catalytic triad of the Neisseria meningitidis peptidoglycan O-acetylesterase reveals mechanistic conservation in SGNH esterase family members.
Acta Crystallogr.,Sect.D, 70, 2014
4QIE
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BU of 4qie by Molmil
Crystal Structure of PduA with edge mutation K26D
Descriptor: GLYCEROL, Propanediol utilization protein PduA, SULFATE ION
Authors:Pang, A.H, Sawaya, M.R, Yeates, T.O.
Deposit date:2014-05-30
Release date:2015-06-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3501 Å)
Cite:Crystal Structure of PduA with edge mutation K26D
To be Published
4MHZ
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Crystal structure of apo-form glutaminyl cyclase from Ixodes scapularis in complex with PBD150
Descriptor: 1-(3,4-dimethoxyphenyl)-3-[3-(1H-imidazol-1-yl)propyl]thiourea, Glutaminyl cyclase, putative
Authors:Huang, K.F, Hsu, H.L, Wang, A.H.J.
Deposit date:2013-08-30
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and functional analyses of a glutaminyl cyclase from Ixodes scapularis reveal metal-independent catalysis and inhibitor binding.
Acta Crystallogr.,Sect.D, 70, 2014
4QNN
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Crystal Structure of phospholipase A 1 from hornet(Vespa basalis) venom
Descriptor: CHLORIDE ION, MERCURY (II) ION, Phospholipase A 1 from hornet(Vespa basalis) venom
Authors:Chuang, C.Y, Ko, T.P, Wang, A.H.J, Hou, M.H.
Deposit date:2014-06-18
Release date:2015-06-24
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of phospholipase A 1 from hornet(Vespa basalis) venom
To be Published
3H03
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BU of 3h03 by Molmil
Crystal structure of the binding domain of the AMPA subunit GluR2 bound to UBP277
Descriptor: 3-[3-(2-carboxyethyl)-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl]-L-alanine, Glutamate receptor 2, ZINC ION
Authors:Ahmed, A.H, Oswald, R.E.
Deposit date:2009-04-08
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanisms of antagonism of the GluR2 AMPA receptor: structure and dynamics of the complex of two willardiine antagonists with the glutamate binding domain.
Biochemistry, 48, 2009
3H5Z
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Crystal Structure of Leishmania major N-myristoyltransferase with bound myristoyl-CoA
Descriptor: 1,2-ETHANEDIOL, Glycylpeptide N-tetradecanoyltransferase, TETRADECANOYL-COA, ...
Authors:Qiu, W, Hutchinson, A, Lin, Y.-H, Wernimont, A, Mackenzie, F, Ravichandran, M, Cossar, D, Zhao, Y, Schapira, M, Arrowsmith, C.H, Bountra, C, Weigelt, J, Edwards, A.M, Ferguson, M.A.J, Fairlamb, A.H, Hui, R, Structural Genomics Consortium (SGC)
Deposit date:2009-04-22
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:N-myristoyltransferase inhibitors as new leads to treat sleeping sickness.
Nature, 464, 2010
3HS4
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BU of 3hs4 by Molmil
Human carbonic anhydrase II complexed with acetazolamide
Descriptor: 5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Robbins, A.H, Genis, C, Domsic, J, Sippel, K.H, Agbandje-McKenna, M, McKenna, R.
Deposit date:2009-06-10
Release date:2009-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution structure of human carbonic anhydrase II complexed with acetazolamide reveals insights into inhibitor drug design.
Acta Crystallogr.,Sect.F, 65, 2009
3FWN
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Dimeric 6-phosphogluconate dehydrogenase complexed with 6-phosphogluconate and 2'-monophosphoadenosine-5'-diphosphate
Descriptor: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, 6-PHOSPHOGLUCONIC ACID, 6-phosphogluconate dehydrogenase, ...
Authors:Chen, Y.-Y, Ko, T.-P, Lo, L.-P, Lin, C.-H, Wang, A.H.-J.
Deposit date:2009-01-19
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conformational changes associated with cofactor/substrate binding of 6-phosphogluconate dehydrogenase from Escherichia coli and Klebsiella pneumoniae: Implications for enzyme mechanism
J.Struct.Biol., 169, 2010
3HZD
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Crystal structure of bothropstoxin-I (BthTX-I), a PLA2 homologue from Bothrops jararacussu venom
Descriptor: LITHIUM ION, Phospholipase A2 homolog bothropstoxin-1
Authors:Silva, M.C.O, Marchi-Salvador, D.P, Fernandes, C.A.H, Soares, A.M, Fontes, M.R.M.
Deposit date:2009-06-23
Release date:2009-07-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Comparison between apo and complexed structures of bothropstoxin-I reveals the role of Lys122 and Ca(2+)-binding loop region for the catalytically inactive Lys49-PLA(2)s.
J.Struct.Biol., 171, 2010
3I03
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Crystal structure of bothropstoxin-I chemically modified by p-bromophenacyl bromide (BPB) - monomeric form at a high resolution
Descriptor: ISOPROPYL ALCOHOL, Phospholipase A2 homolog bothropstoxin-1, p-Bromophenacyl bromide
Authors:Marchi-Salvador, D.P, Fernandes, C.A.H, Soares, A.M, Fontes, M.R.M.
Deposit date:2009-06-24
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Comparison between apo and complexed structures of bothropstoxin-I reveals the role of Lys122 and Ca(2+)-binding loop region for the catalytically inactive Lys49-PLA(2)s.
J.Struct.Biol., 171, 2010
3HTL
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BU of 3htl by Molmil
Structure of the Corynebacterium diphtheriae major pilin SpaA points to a modular pilus assembly with stabilizing isopeptide bonds
Descriptor: CALCIUM ION, Putative surface-anchored fimbrial subunit, SODIUM ION
Authors:Kang, H.J, Paterson, N.G, Gaspar, A.H, Ton-That, H, Baker, E.N.
Deposit date:2009-06-11
Release date:2009-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Corynebacterium diphtheriae shaft pilin SpaA is built of tandem Ig-like modules with stabilizing isopeptide and disulfide bonds
Proc.Natl.Acad.Sci.USA, 106, 2009
3I3A
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Structural Basis for the Sugar Nucleotide and Acyl Chain Selectivity of Leptospira interrogans LpxA
Descriptor: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, S-[2-({N-[(2R)-2-hydroxy-4-{[(S)-hydroxy(methoxy)phosphoryl]oxy}-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl] (3R)-3-hydroxydodecanethioate
Authors:Williams, A.H.
Deposit date:2009-06-30
Release date:2009-09-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural basis for the sugar nucleotide and acyl-chain selectivity of Leptospira interrogans LpxA.
Biochemistry, 48, 2009
3HR6
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Structure of the Corynebacterium diphtheriae major pilin SpaA points to a modular pilus assembly stabilizing isopeptide bonds
Descriptor: CALCIUM ION, IODIDE ION, Putative surface-anchored fimbrial subunit
Authors:Kang, H.J, Paterson, N.G, Gaspar, A.H, Ton-That, H, Baker, E.N.
Deposit date:2009-06-08
Release date:2009-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Corynebacterium diphtheriae shaft pilin SpaA is built of tandem Ig-like modules with stabilizing isopeptide and disulfide bonds
Proc.Natl.Acad.Sci.USA, 106, 2009
3I3X
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Structural Basis for the Sugar Nucleotide and Acyl Chain Selectivity of Leptospira interrogans LpxA
Descriptor: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, uridine-5'-diphosphate-3-N-(R-3-hydroxylauroyl)-N-acetyl-D-glucosamine
Authors:Williams, A.H.
Deposit date:2009-07-01
Release date:2009-09-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the sugar nucleotide and acyl-chain selectivity of Leptospira interrogans LpxA.
Biochemistry, 48, 2009
3HSQ
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Structural Basis for the Sugar Nucleotide and Acyl Chain Selectivity of Leptospira interrogans LpxA
Descriptor: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
Authors:Robins, L.I, Williams, A.H, Raetz, C.R.
Deposit date:2009-06-10
Release date:2009-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the sugar nucleotide and acyl-chain selectivity of Leptospira interrogans LpxA.
Biochemistry, 48, 2009

223532

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