Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5XKV
DownloadVisualize
BU of 5xkv by Molmil
structure of sperm whale myoglobin F138W
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H.
Deposit date:2017-05-09
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Rational design of artificial dye-decolorizing peroxidases using myoglobin by engineering Tyr/Trp in the heme center
Dalton Trans, 46, 2017
5XKW
DownloadVisualize
BU of 5xkw by Molmil
myoglobin mutant F43Y/F46Y
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H.
Deposit date:2017-05-09
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Rational design of artificial dye-decolorizing peroxidases using myoglobin by engineering Tyr/Trp in the heme center
Dalton Trans, 46, 2017
5YZF
DownloadVisualize
BU of 5yzf by Molmil
X-ray crystal structure of met K42C sperm whale myoglobin
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, sperm whale myoglobin
Authors:Yuan, H.
Deposit date:2017-12-14
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Formation of Cys-heme cross-link in K42C myoglobin under reductive conditions with molecular oxygen
J. Inorg. Biochem., 182, 2018
5ZEO
DownloadVisualize
BU of 5zeo by Molmil
X-ray structure of sperm whale V21C/V66C/F46S myoglobin mutant with an intramolecular disulfide bond
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H.
Deposit date:2018-02-27
Release date:2018-05-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Regulation of both the structure and function by a de novo designed disulfide bond: a case study of heme proteins in myoglobin
Chem. Commun. (Camb.), 54, 2018
5ZZF
DownloadVisualize
BU of 5zzf by Molmil
X-ray structure of F43Y/H64D sperm whale myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W.
Deposit date:2018-06-01
Release date:2018-10-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Rationally Designed Myoglobin Exhibits a Catalytic Dehalogenation Efficiency More than 1000-Fold That of a Native Dehaloperoxidase
Acs Catalysis, 8, 2018
5ZZG
DownloadVisualize
BU of 5zzg by Molmil
X-ray structure of F43Y/H64D sperm whale myoglobin in complex with TCP
Descriptor: 2,4,6-trichlorophenol, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W.
Deposit date:2018-06-01
Release date:2018-10-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Rationally Designed Myoglobin Exhibits a Catalytic Dehalogenation Efficiency More than 1000-Fold That of a Native Dehaloperoxidase
Acs Catalysis, 8, 2018
6KRF
DownloadVisualize
BU of 6krf by Molmil
An X-ray structure of ferric F43Y/F46S sperm whale myoglobin in complex with guaiacol
Descriptor: Guaiacol, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W.
Deposit date:2019-08-21
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:A Catalytic Binding Site Together with a Distal Tyr in MyoglobinAffords Catalytic Efficiencies Similar to Natural Peroxidases.
Acs Catalysis, 10, 2020
6KRC
DownloadVisualize
BU of 6krc by Molmil
An X-ray structure of ferric F43Y/F46S sperm whale myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W.
Deposit date:2019-08-21
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:A Catalytic Binding Site Together with a Distal Tyr in MyoglobinAffords Catalytic Efficiencies Similar to Natural Peroxidases.
Acs Catalysis, 10, 2020
6LE3
DownloadVisualize
BU of 6le3 by Molmil
Crystal structure of gluconate 5-dehydrogenase from Lentibacter algarum
Descriptor: ACETYL GROUP, Gluconate 5-dehydrogenase
Authors:Yuan, H.
Deposit date:2019-11-23
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of gluconate 5-dehydrogenase from Lentibacter algarum.
Acta Crystallogr.,Sect.F, 76, 2020
5GZO
DownloadVisualize
BU of 5gzo by Molmil
Structure of neutralizing antibody bound to Zika envelope protein
Descriptor: Antibody heavy chain, Antibody light chain, Genome polyprotein
Authors:Wang, Q, Yang, H, Liu, X, Dai, L, Ma, T, Qi, J, Wong, G, Peng, R, Liu, S, Li, J, Li, S, Song, J, Liu, J, He, J, Yuan, H, Xiong, Y, Liao, Y, Li, J, Yang, J, Tong, Z, Griffin, B, Bi, Y, Liang, M, Xu, X, Cheng, G, Wang, P, Qiu, X, Kobinger, G, Shi, Y, Yan, J, Gao, G.F.
Deposit date:2016-09-29
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.755 Å)
Cite:Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus
Sci Transl Med, 8, 2016
5GZN
DownloadVisualize
BU of 5gzn by Molmil
Structure of neutralizing antibody bound to Zika envelope protein
Descriptor: Antibody Heavy chain, Antibody light chain, Genome polyprotein
Authors:Wang, Q, Yang, H, Liu, X, Dai, L, Ma, T, Qi, J, Wong, G, Peng, R, Liu, S, Li, J, Li, S, Song, J, Liu, J, He, J, Yuan, H, Xiong, Y, Liao, Y, Li, J, Yang, J, Tong, Z, Griffin, B, Bi, Y, Liang, M, Xu, X, Cheng, G, Wang, P, Qiu, X, Kobinger, G, Shi, Y, Yan, J, Gao, G.F.
Deposit date:2016-09-29
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus
Sci Transl Med, 8, 2016
1CLF
DownloadVisualize
BU of 1clf by Molmil
CLOSTRIDIUM PASTEURIANUM FERREDOXIN
Descriptor: FERREDOXIN, IRON/SULFUR CLUSTER
Authors:Bertini, I, Donaire, A, Feinberg, B.A, Luchinat, C, Piccioli, M, Yuan, H.
Deposit date:1995-06-21
Release date:1996-01-29
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the oxidized 2[4Fe-4S] ferredoxin from Clostridium pasteurianum.
Eur.J.Biochem., 232, 1995
3Q35
DownloadVisualize
BU of 3q35 by Molmil
Structure of the Rtt109-AcCoA/Vps75 complex and implications for chaperone-mediated histone acetylation
Descriptor: 1,2-ETHANEDIOL, ACETYL COENZYME *A, Histone acetyltransferase, ...
Authors:Tang, Y, Yuan, H, Meeth, K, Marmorstein, R.
Deposit date:2010-12-21
Release date:2011-02-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the Rtt109-AcCoA/Vps75 Complex and Implications for Chaperone-Mediated Histone Acetylation.
Structure, 19, 2011
3Q33
DownloadVisualize
BU of 3q33 by Molmil
Structure of the Rtt109-AcCoA/Vps75 Complex and Implications for Chaperone-Mediated Histone Acetylation
Descriptor: 1,2-ETHANEDIOL, ACETYL COENZYME *A, HISTONE H3, ...
Authors:Tang, Y, Yuan, H, Meeth, K, Marmorstein, R.
Deposit date:2010-12-21
Release date:2011-02-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the Rtt109-AcCoA/Vps75 Complex and Implications for Chaperone-Mediated Histone Acetylation.
Structure, 19, 2011
3HP3
DownloadVisualize
BU of 3hp3 by Molmil
Crystal structure of CXCL12
Descriptor: CXCL12 protein, GOLD ION
Authors:Murphy, J.W, Lolis, E, Xiong, Y, Yuan, H, Crichlow, G.
Deposit date:2009-06-03
Release date:2010-01-26
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Heterologous quaternary structure of CXCL12 and its relationship to the CC chemokine family
Proteins, 78, 2009
2NS2
DownloadVisualize
BU of 2ns2 by Molmil
Crystal Structure of Spindlin1
Descriptor: PHOSPHATE ION, Spindlin-1
Authors:Zhao, Q, Qin, L, Jiang, F, Wu, B, Yue, W, Xu, F, Rong, Z, Yuan, H, Xie, X, Gao, Y, Bai, C, Bartlam, M.
Deposit date:2006-11-02
Release date:2006-11-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of human spindlin1. Tandem tudor-like domains for cell cycle regulation
J.Biol.Chem., 282, 2007
3NNE
DownloadVisualize
BU of 3nne by Molmil
Crystal structure of choline oxidase S101A mutant
Descriptor: ACETATE ION, Choline oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Wang, Y.-F, Finnegan, S, Yuan, H, Orville, A.M, Weber, I.T, Gadda, G.
Deposit date:2010-06-23
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural and kinetic studies on the Ser101Ala variant of choline oxidase: Catalysis by compromise.
Arch.Biochem.Biophys., 501, 2010
5XPV
DownloadVisualize
BU of 5xpv by Molmil
Structure of the V domain of amphioxus IgVJ-C2
Descriptor: amphioxus IgVJ-C2
Authors:Chen, R, Qi, J, Zhang, N, Zhang, L, Yao, S, Wu, Y, Jiang, B, Wang, Z, Yuan, H, Zhang, Q, Xia, C.
Deposit date:2017-06-05
Release date:2018-04-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery and Analysis of Invertebrate IgVJ-C2 Structure from Amphioxus Provides Insight into the Evolution of the Ig Superfamily.
J. Immunol., 200, 2018
5XPW
DownloadVisualize
BU of 5xpw by Molmil
Structure of amphioxus IgVJ-C2 molecule
Descriptor: amphioxus IgVJ-C2
Authors:Chen, R, Qi, J, Zhang, N, Zhang, L, Yao, S, Wu, Y, Jiang, B, Wang, Z, Yuan, H, Zhang, Q, Xia, C.
Deposit date:2017-06-05
Release date:2018-04-18
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Discovery and Analysis of Invertebrate IgVJ-C2 Structure from Amphioxus Provides Insight into the Evolution of the Ig Superfamily.
J. Immunol., 200, 2018
6JDD
DownloadVisualize
BU of 6jdd by Molmil
Crystal structure of the cypemycin decarboxylase CypD.
Descriptor: Cypemycin cysteine dehydrogenase (decarboxylating), DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Zhang, Q, Yuan, H.
Deposit date:2019-02-01
Release date:2019-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Convergent evolution of the Cys decarboxylases involved in aminovinyl-cysteine (AviCys) biosynthesis.
FEBS Lett., 593, 2019
6JP1
DownloadVisualize
BU of 6jp1 by Molmil
An X-ray structure of met sperm whale F43Y/T67R myoglobin with Tyr-heme double cross-links
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lin, Y.W, Yuan, H.
Deposit date:2019-03-25
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Unique Tyr-heme double cross-links in F43Y/T67R myoglobin: an artificial enzyme with a peroxidase activity comparable to that of native peroxidases.
Chem.Commun.(Camb.), 55, 2019
6KRJ
DownloadVisualize
BU of 6krj by Molmil
Crystal structure of Hexokinase
Descriptor: Phosphotransferase
Authors:Sun, M.F, Wang, Y.H, Liao, S.Q, Yuan, H.
Deposit date:2019-08-22
Release date:2020-09-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of Hexokinase
To Be Published
6L7N
DownloadVisualize
BU of 6l7n by Molmil
crystal structure of a FUNGAL LIPASES
Descriptor: Lipase, class 3
Authors:Wang, Y.H, Yuan, H, Lan, D.M, Liu, X.H.
Deposit date:2019-11-01
Release date:2020-11-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:crystal structure of a FUNGAL LIPASES
To Be Published
5X5M
DownloadVisualize
BU of 5x5m by Molmil
Crystal structure of a hydrolase encoded by lin2189 from Listeria innocua
Descriptor: (+)-Yatakemycin, DIMETHYL SULFOXIDE, Lin2189 protein
Authors:Zhang, J.
Deposit date:2017-02-16
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.211 Å)
Cite:GyrI-like proteins catalyze cyclopropanoid hydrolysis to confer cellular protection
Nat Commun, 8, 2017
5YA5
DownloadVisualize
BU of 5ya5 by Molmil
CRYSTAL STRUCTURE OF c-MET IN COMPLEX WITH NOVEL INHIBITOR
Descriptor: 2-[3-(4-methoxybenzyl)[1,2,4]triazolo[3,4-b][1,3,4]thiadiazol-6-yl]-1H-indole, Hepatocyte growth factor receptor
Authors:Liu, Q, Xu, Y.
Deposit date:2017-08-30
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Discovery, optimization and biological evaluation for novel c-Met kinase inhibitors
Eur J Med Chem, 143, 2018

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon