2LSM
| Solution structure of gpFI C-terminal domain | 分子名称: | DNA-packaging protein FI | 著者 | Popovic, A, Wu, B, Edwards, A.M, Davidson, A.R, Maxwell, K.L. | 登録日 | 2012-05-02 | 公開日 | 2012-07-25 | 最終更新日 | 2023-06-14 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural and biochemical characterization of phage lambda FI protein (gpFI) reveals a novel mechanism of DNA packaging chaperone activity. J.Biol.Chem., 287, 2012
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5D8M
| Crystal structure of the metagenomic carboxyl esterase MGS0156 | 分子名称: | Metagenomic carboxyl esterase MGS0156 | 著者 | Cui, H, Nocek, B, Tchigvintsev, A, Popovic, A, Savchenko, A, Joachimiak, A, Yakunin, A. | 登録日 | 2015-08-17 | 公開日 | 2016-10-05 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Crystal structure of esterase (MGS0156) To Be Published
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4JHC
| Crystal structure of the uncharacterized Maf protein YceF from E. coli | 分子名称: | GLYCEROL, Maf-like protein YceF, UNKNOWN ATOM OR ION | 著者 | Dong, A, Xu, X, Cui, H, Tchigvintsev, A, Flick, R, Brown, G, Popovic, A, Yakunin, A.F, Savchenko, A. | 登録日 | 2013-03-04 | 公開日 | 2013-03-20 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Biochemical and structural studies of conserved maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides. Chem.Biol., 20, 2013
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4LU1
| Crystal structure of the uncharacterized Maf protein YceF from E. coli, mutant D69A | 分子名称: | Maf-like protein YceF, UNKNOWN ATOM OR ION | 著者 | Dong, A, Xu, X, Cui, H, Tchigvintsev, A, Flick, R, Brown, G, Popovic, A, Yakunin, A.F, Savchenko, A, Structural Genomics Consortium (SGC) | 登録日 | 2013-07-24 | 公開日 | 2013-08-14 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (1.92 Å) | 主引用文献 | Biochemical and structural studies of conserved maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides. Chem.Biol., 20, 2013
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5JRF
| Crystal structure of the light-driven sodium pump KR2 bound with iodide ions | 分子名称: | EICOSANE, IODIDE ION, Sodium pumping rhodopsin | 著者 | Melnikov, I, Polovinkin, V, Kovalev, K, Shevchenko, V, Gushchin, I, Popov, A, Gordeliy, V. | 登録日 | 2016-05-06 | 公開日 | 2017-05-31 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Fast iodide-SAD phasing for high-throughput membrane protein structure determination. Sci Adv, 3, 2017
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5JSI
| Structure of membrane protein | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ... | 著者 | Melnikov, I, Polovinkin, V, Kovalev, K, Shevchenko, V, Gushchin, I, Popov, A, Gordeliy, V. | 登録日 | 2016-05-08 | 公開日 | 2017-05-31 | 最終更新日 | 2023-03-08 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Fast iodide-SAD phasing for high-throughput membrane protein structure determination. Sci Adv, 3, 2017
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4NY6
| Neutron structure of leucine and valine methyl protonated type III antifreeze | 分子名称: | Type-3 ice-structuring protein HPLC 12 | 著者 | Fisher, S.J, Blakeley, M.P, Howard, E.I, Petite-Haertlein, I, Haertlein, M, Mitschler, A, Cousido-Siah, A, Salvaya, A.G, Popov, A, Muller-Dieckmann, C, Petrova, T, Podjarny, A.D. | 登録日 | 2013-12-10 | 公開日 | 2014-12-24 | 最終更新日 | 2024-02-28 | 実験手法 | NEUTRON DIFFRACTION (1.05 Å), X-RAY DIFFRACTION | 主引用文献 | Perdeuteration: improved visualization of solvent structure in neutron macromolecular crystallography. Acta Crystallogr.,Sect.D, 70, 2014
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4OV0
| Structure of Bacteriorhdopsin Transferred from Amphipol A8-35 to a Lipidic Mesophase | 分子名称: | Bacteriorhodopsin, RETINAL | 著者 | Polovinkin, V, Gushchin, I, Sintsov, M, Round, E, Balandin, T, Chervakov, P, Schevchenko, V, Utrobin, P, Popov, A, Borshchevskiy, V, Mishin, A, Kuklin, A, Willbold, D, Popot, J.L, Gordeliy, V. | 登録日 | 2014-02-19 | 公開日 | 2014-10-01 | 最終更新日 | 2017-11-22 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase. J.Membr.Biol., 247, 2014
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4V7G
| Crystal Structure of Lumazine Synthase from Bacillus Anthracis | 分子名称: | 6,7-dimethyl-8-ribityllumazine synthase, PHOSPHATE ION | 著者 | Morgunova, E, Illarionov, B, Saller, S, Popov, A, Sambaiah, T, Bacher, A, Cushman, M, Fischer, M, Ladenstein, R. | 登録日 | 2009-09-16 | 公開日 | 2014-07-09 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Structural study and thermodynamic characterization of inhibitor binding to lumazine synthase from Bacillus anthracis. Acta Crystallogr.,Sect.D, 66, 2010
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4XA7
| Soluble part of holo NqrC from V. harveyi | 分子名称: | CHLORIDE ION, FLAVIN MONONUCLEOTIDE, Na(+)-translocating NADH-quinone reductase subunit C | 著者 | Borshchevskiy, V, Round, E, Bertsova, Y, Polovinkin, V, Gushchin, I, Mishin, A, Kovalev, K, Kachalova, G, Popov, A, Bogachev, A, Gordeliy, V. | 登録日 | 2014-12-12 | 公開日 | 2015-03-18 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (1.56 Å) | 主引用文献 | Structural and Functional Investigation of Flavin Binding Center of the NqrC Subunit of Sodium-Translocating NADH:Quinone Oxidoreductase from Vibrio harveyi. Plos One, 10, 2015
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4XRM
| homodimer of TALE type homeobox transcription factor MEIS1 complexes with specific DNA | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(P*AP*GP*CP*TP*GP*AP*CP*AP*GP*CP*TP*GP*TP*CP*AP*AP*G)-3'), DNA (5'-D(P*TP*CP*TP*TP*GP*AP*CP*AP*GP*CP*TP*GP*TP*CP*AP*GP*C)-3'), ... | 著者 | Morgunova, E, Jorma, A, Yin, Y, Nitta, K.R, Dave, K, Enge, M, Kivioja, T, Popov, A, Taipale, J. | 登録日 | 2015-01-21 | 公開日 | 2015-11-04 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature, 527, 2015
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4XRS
| Heterodimeric complex of transcription factors MEIS1 and DLX3 on specific DNA | 分子名称: | DNA (5'-D(P*AP*CP*AP*AP*TP*TP*AP*TP*CP*CP*TP*GP*TP*CP*AP*AP*C)-3'), DNA (5'-D(P*CP*AP*AP*TP*TP*AP*TP*CP*CP*TP*GP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*GP*AP*TP*AP*AP*TP*TP*GP*TP*T)-3'), ... | 著者 | Jorma, A, Yin, Y, Nitta, K.R, Dave, K, Enge, M, Kivioja, T, Popov, A, Morgunova, E, Taipale, J. | 登録日 | 2015-01-21 | 公開日 | 2015-11-04 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature, 527, 2015
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5TJE
| Murine class I major histocompatibility complex H-2Db in complex with LCMV-derived gp33 and T cell receptor P14 | 分子名称: | ALPHA CHAIN OF MURINE T CELL RECEPTOR p14, BETA CHAIN OF MURINE T CELL RECEPTOR p14, Beta-2-microglobulin, ... | 著者 | Achour, A, Sandalova, T, Allerbring, E, Popov, A. | 登録日 | 2016-10-04 | 公開日 | 2017-11-01 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Thernary complexes of TCR P14 give insights into the mechanisms behind reestablishment of CTL responses against a viral escape mutant to be published
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4YO2
| Structure of E2F8, an atypical member of E2F family of transcription factors | 分子名称: | DNA (5'-D(P*TP*TP*TP*TP*CP*CP*CP*GP*CP*CP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*GP*GP*CP*GP*GP*GP*AP*AP*AP*A)-3'), Transcription factor E2F8 | 著者 | Morgunova, E, Yin, Y, Jolma, A, Dave, K, Schmierer, B, Popov, A, Eremina, N, Nilsson, L, Taipale, J. | 登録日 | 2015-03-11 | 公開日 | 2015-12-09 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (3.073 Å) | 主引用文献 | Structural insights into the DNA-binding specificity of E2F family transcription factors. Nat Commun, 6, 2015
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5JEF
| Fragment of nitrate/nitrite sensor histidine kinase NarQ (WT) in asymmetric holo state | 分子名称: | EICOSANE, NITRATE ION, Nitrate/nitrite sensor protein NarQ | 著者 | Gushchin, I, Melnikov, I, Polovinkin, V, Ishchenko, A, Popov, A, Gordeliy, V. | 登録日 | 2016-04-18 | 公開日 | 2017-05-31 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.42 Å) | 主引用文献 | Mechanism of transmembrane signaling by sensor histidine kinases. Science, 356, 2017
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5IJI
| Fragment of nitrate/nitrite sensor histidine kinase NarQ (WT) in symmetric holo state | 分子名称: | EICOSANE, NITRATE ION, Nitrate/nitrite sensor histidine kinase NarQ | 著者 | Gushchin, I, Melnikov, I, Polovinkin, V, Ishchenko, A, Popov, A, Gordeliy, V. | 登録日 | 2016-03-02 | 公開日 | 2017-05-31 | 最終更新日 | 2017-06-21 | 実験手法 | X-RAY DIFFRACTION (1.94 Å) | 主引用文献 | Mechanism of transmembrane signaling by sensor histidine kinases. Science, 356, 2017
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5JEQ
| Fragment of nitrate/nitrite sensor histidine kinase NarQ (R50K) in symmetric apo state | 分子名称: | Nitrate/nitrite sensor protein NarQ, PHOSPHATE ION | 著者 | Gushchin, I, Melnikov, I, Polovinkin, V, Ishchenko, A, Popov, A, Gordeliy, V. | 登録日 | 2016-04-18 | 公開日 | 2017-05-31 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Mechanism of transmembrane signaling by sensor histidine kinases. Science, 356, 2017
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5JGP
| Crystal structure of the nitrate/nitrite sensor NarQ fragment bound with iodide ions | 分子名称: | IODIDE ION, NITRATE ION, Nitrate/nitrite sensor protein NarQ | 著者 | Melnikov, I, Polovinkin, V, Popov, A, Gordeliy, V. | 登録日 | 2016-04-20 | 公開日 | 2017-05-31 | 最終更新日 | 2023-03-08 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Fast iodide-SAD phasing for high-throughput membrane protein structure determination. Sci Adv, 3, 2017
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5JTB
| Crystal structure of the chimeric protein of A2aAR-BRIL with bound iodide ions | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, ... | 著者 | Melnikov, I, Polovinkin, V, Shevtsov, M, Borshchevskiy, V, Cherezov, V, Popov, A, Gordeliy, V. | 登録日 | 2016-05-09 | 公開日 | 2017-05-31 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Fast iodide-SAD phasing for high-throughput membrane protein structure determination. Sci Adv, 3, 2017
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5HOD
| Structure of LHX4 transcription factor complexed with DNA | 分子名称: | DNA (5'-D(P*AP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*CP*GP*TP*AP*AP*TP*TP*AP*G)-3'), DNA (5'-D(P*CP*TP*AP*AP*TP*TP*AP*CP*GP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*T)-3'), LIM/homeobox protein Lhx4 | 著者 | Morgunova, E, Yin, Y, Popov, A, Taipale, J. | 登録日 | 2016-01-19 | 公開日 | 2017-02-01 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.682 Å) | 主引用文献 | Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science, 356, 2017
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8BYX
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8BZM
| FOXK1-ELF1-heterodimer bound to DNA | 分子名称: | DNA, ETS-related transcription factor Elf-1, Forkhead box protein K1, ... | 著者 | Morgunova, E, Popov, A, Yin, Y, Taipale, J. | 登録日 | 2022-12-15 | 公開日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.69 Å) | 主引用文献 | FOXK1-ELF1_heterodimer bound to DNA To Be Published
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5EGO
| HOXB13-MEIS1 heterodimer bound to methylated DNA | 分子名称: | DNA (5'-D(*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3'), DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*G)-3'), Homeobox protein Hox-B13, ... | 著者 | Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J. | 登録日 | 2015-10-27 | 公開日 | 2016-11-09 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.54 Å) | 主引用文献 | Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science, 356, 2017
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5EF6
| Structure of HOXB13 complex with methylated DNA | 分子名称: | DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3'), Homeobox protein Hox-B13 | 著者 | Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J. | 登録日 | 2015-10-23 | 公開日 | 2017-02-08 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science, 356, 2017
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5EG0
| HOXB13-MEIS1 heterodimer bound to DNA | 分子名称: | DNA (5'-D(*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3'), DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*G)-3'), Homeobox protein Hox-B13, ... | 著者 | Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J. | 登録日 | 2015-10-26 | 公開日 | 2016-11-09 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (3.101 Å) | 主引用文献 | Molecular basis of recognition of two distinct DNA sequences by a single transcription factor To Be Published
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