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3KYD
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BU of 3kyd by Molmil
Human SUMO E1~SUMO1-AMP tetrahedral intermediate mimic
分子名称: 1,2-ETHANEDIOL, 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine, SUMO-activating enzyme subunit 1, ...
著者Lima, C.D.
登録日2009-12-05
公開日2010-02-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Active site remodelling accompanies thioester bond formation in the SUMO E1.
Nature, 463, 2010
3I2D
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BU of 3i2d by Molmil
Crystal Structure of S. Cerevisiae SUMO E3 Ligase SIZ1
分子名称: E3 SUMO-protein ligase SIZ1, ZINC ION
著者Lima, C.D, Yunus, A.A.
登録日2009-06-29
公開日2009-09-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of the Siz/PIAS SUMO E3 ligase Siz1 and determinants required for SUMO modification of PCNA.
Mol.Cell, 35, 2009
3II4
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BU of 3ii4 by Molmil
Structure of mycobacterial lipoamide dehydrogenase bound to a triazaspirodimethoxybenzoyl inhibitor
分子名称: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, N-[2-(2,4-dichlorophenyl)ethyl]-2-{8-[(2,4-dimethoxyphenyl)carbonyl]-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl}acetamide
著者Lima, C.D.
登録日2009-07-31
公開日2010-01-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Triazaspirodimethoxybenzoyls as selective inhibitors of mycobacterial lipoamide dehydrogenase .
Biochemistry, 49, 2010
4OO1
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BU of 4oo1 by Molmil
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Exosome complex component CSL4, ...
著者Lima, C.D, Wasmuth, E.V.
登録日2014-01-29
公開日2014-07-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA.
Nature, 511, 2014
4PN0
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BU of 4pn0 by Molmil
Structure of S. pombe Pct1 RNA triphosphatase
分子名称: mRNA-capping enzyme subunit beta
著者Lima, C.D, Doamekpor, S.K.
登録日2014-05-22
公開日2014-11-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Fission yeast RNA triphosphatase reads an Spt5 CTD code.
Rna, 21, 2015
4PN1
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BU of 4pn1 by Molmil
Structure of S. pombe Pct1 RNA triphosphatase in complex with the Spt5 CTD
分子名称: 1,2-ETHANEDIOL, FORMIC ACID, Synthetic peptide, ...
著者Lima, C.D, Doamekpor, S.K.
登録日2014-05-22
公開日2014-11-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Fission yeast RNA triphosphatase reads an Spt5 CTD code.
Rna, 21, 2015
5E6J
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BU of 5e6j by Molmil
Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe
分子名称: ACETATE ION, NICKEL (II) ION, Polyubiquitin-B, ...
著者Lima, C.D, Bekes, M.
登録日2015-10-09
公開日2016-05-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Recognition of Lys48-Linked Di-ubiquitin and Deubiquitinating Activities of the SARS Coronavirus Papain-like Protease.
Mol. Cell, 62, 2016
3KYC
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BU of 3kyc by Molmil
Human SUMO E1 complex with a SUMO1-AMP mimic
分子名称: 5'-deoxy-5'-(sulfamoylamino)adenosine, SUMO-activating enzyme subunit 1, SUMO-activating enzyme subunit 2, ...
著者Lima, C.D.
登録日2009-12-05
公開日2010-02-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Active site remodelling accompanies thioester bond formation in the SUMO E1.
Nature, 463, 2010
3KYH
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BU of 3kyh by Molmil
Saccharomyces cerevisiae Cet1-Ceg1 capping apparatus
分子名称: mRNA-capping enzyme subunit alpha, mRNA-capping enzyme subunit beta
著者Lima, C.D.
登録日2009-12-06
公開日2010-02-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the Saccharomyces cerevisiae Cet1-Ceg1 mRNA Capping Apparatus.
Structure, 18, 2010
6U75
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Crystal Structure of S. Cerevisiae SUMO E3 Ligase SIZ2
分子名称: E3 SUMO-protein ligase SIZ2, ZINC ION
著者Lima, C.D, Cappadocia, L.
登録日2019-08-31
公開日2020-10-28
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献DNA asymmetry promotes SUMO modification of the single-stranded DNA-binding protein RPA.
Embo J., 40, 2021
2NN6
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BU of 2nn6 by Molmil
Structure of the human RNA exosome composed of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, and Rrp40
分子名称: 3'-5' exoribonuclease CSL4 homolog, Exosome complex exonuclease RRP4, Exosome complex exonuclease RRP40, ...
著者Lima, C.D.
登録日2006-10-23
公開日2006-12-26
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Cell(Cambridge,Mass.), 127, 2006
2Q2T
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BU of 2q2t by Molmil
Structure of Chlorella virus DNA ligase-adenylate bound to a 5' phosphorylated nick
分子名称: 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3', 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3', 5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3', ...
著者Lima, C.D, Nandakumar, J, Nair, P.A, Smith, P, Shuman, S.
登録日2007-05-29
公開日2007-07-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol., 14, 2007
4M52
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BU of 4m52 by Molmil
Structure of Mtb Lpd bound to SL827
分子名称: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, N~2~-[(2-amino-5-bromopyridin-3-yl)sulfonyl]-N-(4-methoxyphenyl)-N~2~-methylglycinamide
著者Lima, C.D.
登録日2013-08-07
公開日2013-11-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Lipoamide channel-binding sulfonamides selectively inhibit mycobacterial lipoamide dehydrogenase.
Biochemistry, 52, 2013
7KMY
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BU of 7kmy by Molmil
Structure of Mtb Lpd bound to 010705
分子名称: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Lima, C.D.
登録日2020-11-03
公開日2021-01-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions.
Acs Infect Dis., 7, 2021
2HV9
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BU of 2hv9 by Molmil
Encephalitozoon cuniculi mRNA Cap (Guanine-N7) Methyltransferase in complex with sinefungin
分子名称: SINEFUNGIN, mRNA cap guanine-N7 methyltransferase
著者Lima, C.D.
登録日2006-07-27
公開日2006-09-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Mutational Analysis of Encephalitozoon cuniculi mRNA Cap (Guanine-N7) Methyltransferase, Structure of the Enzyme Bound to Sinefungin, and Evidence That Cap Methyltransferase Is the Target of Sinefungin's Antifungal Activity
J.Biol.Chem., 281, 2006
5VZJ
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BU of 5vzj by Molmil
STRUCTURE OF A TWELVE COMPONENT MPP6-NUCLEAR RNA EXOSOME COMPLEX BOUND TO RNA
分子名称: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ...
著者Lima, C.D, Wasmuth, E.V.
登録日2017-05-28
公開日2017-08-02
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure and reconstitution of yeast Mpp6-nuclear exosome complexes reveals that Mpp6 stimulates RNA decay and recruits the Mtr4 helicase.
Elife, 6, 2017
6O82
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BU of 6o82 by Molmil
S. pombe ubiquitin E1 complex with a ubiquitin-AMP mimic
分子名称: 1,2-ETHANEDIOL, 5'-deoxy-5'-(sulfamoylamino)adenosine, MAGNESIUM ION, ...
著者Olsen, S.K, Lima, C.D.
登録日2019-03-08
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.604 Å)
主引用文献Structural basis for adenylation and thioester bond formation in the ubiquitin E1.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O83
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BU of 6o83 by Molmil
S. pombe ubiquitin E1~ubiquitin-AMP tetrahedral intermediate mimic
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine, ...
著者Hann, Z.S, Lima, C.D.
登録日2019-03-08
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.153 Å)
主引用文献Structural basis for adenylation and thioester bond formation in the ubiquitin E1.
Proc.Natl.Acad.Sci.USA, 116, 2019
6OP8
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BU of 6op8 by Molmil
S. pombe Ubc7/U7BR complex
分子名称: 1,2-ETHANEDIOL, CUE domain-containing protein 4, mitochondrial, ...
著者Hann, Z.S, Lima, C.D.
登録日2019-04-24
公開日2019-08-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.703 Å)
主引用文献Crystal structure of the Schizosaccharomyces pombe U7BR E2-binding region in complex with Ubc7.
Acta Crystallogr.,Sect.F, 75, 2019
6C90
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BU of 6c90 by Molmil
Human Mtr4 helicase in complex with ZCCHC8-CTD
分子名称: ADENOSINE-5'-DIPHOSPHATE, Exosome RNA helicase MTR4,Exosome RNA helicase MTR4, L(+)-TARTARIC ACID, ...
著者Puno, M.R, Lima, C.D.
登録日2018-01-25
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for MTR4-ZCCHC8 interactions that stimulate the MTR4 helicase in the nuclear exosome-targeting complex.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5FG0
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BU of 5fg0 by Molmil
Structure of the conserved yeast listerin (Ltn1) N-terminal domain, MONOCLINIC FORM
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase listerin, POTASSIUM ION
著者Doamekpor, S.K, Lima, C.D.
登録日2015-12-19
公開日2016-07-06
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits.
Proc.Natl.Acad.Sci.USA, 113, 2016
6D6R
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BU of 6d6r by Molmil
Human nuclear exosome-MTR4 RNA complex - composite map after focused reconstruction
分子名称: DNA/RNA (62-MER), Exosome RNA helicase MTR4, Exosome complex component CSL4, ...
著者Weick, E.-M, Lima, C.D.
登録日2018-04-22
公開日2018-06-20
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex.
Cell, 173, 2018
6D6Q
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BU of 6d6q by Molmil
Human nuclear exosome-MTR4 RNA complex - overall reconstruction
分子名称: DNA/RNA (62-MER), Exosome RNA helicase MTR4, Exosome complex component CSL4, ...
著者Weick, E.-M, Lima, C.D.
登録日2018-04-22
公開日2018-06-20
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex.
Cell, 173, 2018
4XQ0
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Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to beryllium fluoride
分子名称: MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, TETRAETHYLENE GLYCOL
著者Ghosh, A, Lima, C.D.
登録日2015-01-18
公開日2015-03-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1.
Rna, 21, 2015
4XPZ
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Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to aluminum fluoride
分子名称: ALUMINUM FLUORIDE, MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, ...
著者Ghosh, A, Lima, C.D.
登録日2015-01-18
公開日2015-03-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1.
Rna, 21, 2015

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