Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4V5J
DownloadVisualize
BU of 4v5j by Molmil
Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
Descriptor: 16S Ribosomal RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Jin, H, Kelley, A.C, Loakes, D, Ramakrishnan, V.
Deposit date:2010-03-24
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the 70S ribosome bound to release factor 2 and a substrate analog provides insights into catalysis of peptide release.
Proc. Natl. Acad. Sci. U.S.A., 107, 2010
4V8O
DownloadVisualize
BU of 4v8o by Molmil
Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
Descriptor: 16S RRNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Jin, H, Kelley, A.C, Ramakrishnan, V.
Deposit date:2011-07-26
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Crystal Structure of the Hybrid State of Ribosome in Complex with the Guanosine Triphosphatase Release Factor 3.
Proc.Natl.Acad.Sci.USA, 108, 2011
2VXW
DownloadVisualize
BU of 2vxw by Molmil
Structural and Functional Studies of the Potent Anti-HIV Chemokine Variant P2-RANTES
Descriptor: C-C MOTIF CHEMOKINE 5
Authors:Jin, H, Li, P, LiWang, P.J.
Deposit date:2008-07-12
Release date:2008-07-29
Last modified:2012-08-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Functional Studies of the Potent Anti-HIV Chemokine Variant P2-Rantes.
Proteins, 78, 2010
3S2Y
DownloadVisualize
BU of 3s2y by Molmil
Crystal structure of a chromate/uranium reductase from Gluconacetobacter hansenii
Descriptor: CHLORIDE ION, Chromate reductase, FLAVIN MONONUCLEOTIDE, ...
Authors:Jin, H, Zhang, Y, Buchko, G.W, Li, P, Squier, T.C, Robinson, H, Varnum, S.M, Long, P.E.
Deposit date:2011-05-17
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.244 Å)
Cite:Structure Determination and Functional Analysis of a Chromate Reductase from Gluconacetobacter hansenii.
Plos One, 7, 2012
2PCW
DownloadVisualize
BU of 2pcw by Molmil
Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA
Descriptor: U65 box H/ACA snoRNA, rRNA substrate of U65 box H/ACA snoRNA
Authors:Jin, H, Loria, J.P, Moore, P.B.
Deposit date:2007-03-30
Release date:2007-05-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA.
Mol.Cell, 26, 2007
2PCV
DownloadVisualize
BU of 2pcv by Molmil
Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA
Descriptor: U65 Box H/ACA snoRNA
Authors:Jin, H, Loria, J.P, Moore, P.B.
Deposit date:2007-03-30
Release date:2007-05-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA.
Mol.Cell, 26, 2007
5Y7Q
DownloadVisualize
BU of 5y7q by Molmil
Crystal structure of paFAN1 bound to 2nt 5'flap DNA with gap
Descriptor: DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*AP*TP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ...
Authors:Jin, H, Cho, Y.
Deposit date:2017-08-17
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease.
J. Biol. Chem., 293, 2018
5Z6W
DownloadVisualize
BU of 5z6w by Molmil
Crystal structure of paFAN1 bound to 2nt 5'flap DNA with gap with Manganese
Descriptor: DNA (5'-D(P*AP*TP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ...
Authors:Jin, H, Cho, Y.
Deposit date:2018-01-25
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease.
J. Biol. Chem., 293, 2018
6J3Q
DownloadVisualize
BU of 6j3q by Molmil
Capsid structure of a freshwater cyanophage Siphoviridae Mic1
Descriptor: cement protein, major capsid protein
Authors:Jin, H, Jiang, Y.L, Yang, F, Zhang, J.T, Li, W.F, Zhou, K, Ju, J, Chen, Y, Zhou, C.Z.
Deposit date:2019-01-05
Release date:2019-10-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Capsid Structure of a Freshwater Cyanophage Siphoviridae Mic1.
Structure, 27, 2019
1FDP
DownloadVisualize
BU of 1fdp by Molmil
PROENZYME OF HUMAN COMPLEMENT FACTOR D, RECOMBINANT PROFACTOR D
Descriptor: PROENZYME OF COMPLEMENT FACTOR D
Authors:Jing, H, Macon, K.J, Moore, D, Delucas, L.J, Volanakis, J.E, Narayana, S.V.L.
Deposit date:1998-12-03
Release date:1999-12-03
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of profactor D activation: from a highly flexible zymogen to a novel self-inhibited serine protease, complement factor D.
Embo J., 18, 1999
1L0Q
DownloadVisualize
BU of 1l0q by Molmil
Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein
Descriptor: Surface layer protein
Authors:Jing, H, Takagi, J, Liu, J.-H, Lindgren, S, Zhang, R.-G, Joachimiak, A, Wang, J.-H, Springer, T.A.
Deposit date:2002-02-12
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Archaeal Surface Layer Proteins Contain beta Propeller, PKD, and beta Helix Domains and Are Related to Metazoan Cell Surface Proteins.
Structure, 10, 2002
1HFD
DownloadVisualize
BU of 1hfd by Molmil
HUMAN COMPLEMENT FACTOR D IN A P21 CRYSTAL FORM
Descriptor: COMPLEMENT FACTOR D
Authors:Jing, H, Babu, Y.S, Moore, D, Kilpatrick, J.M, Liu, X.-Y, Volanakis, J.E, Narayana, S.V.L.
Deposit date:1998-06-18
Release date:1999-06-22
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of native and complexed complement factor D: implications of the atypical His57 conformation and self-inhibitory loop in the regulation of specific serine protease activity.
J.Mol.Biol., 282, 1998
1DLE
DownloadVisualize
BU of 1dle by Molmil
FACTOR B SERINE PROTEASE DOMAIN
Descriptor: COMPLEMENT FACTOR B
Authors:Jing, H, Xu, Y, Carson, M, Moore, D, Macon, K.J, Volanakis, J.E, Narayana, S.V.
Deposit date:1999-12-09
Release date:2000-12-13
Last modified:2019-11-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:New structural motifs on the chymotrypsin fold and their potential roles in complement factor B.
EMBO J., 19, 2000
1BIO
DownloadVisualize
BU of 1bio by Molmil
HUMAN COMPLEMENT FACTOR D IN COMPLEX WITH ISATOIC ANHYDRIDE INHIBITOR
Descriptor: COMPLEMENT FACTOR D, GLYCEROL, ISATOIC ANHYDRIDE
Authors:Jing, H, Babu, Y.S, Moore, D, Kilpatrick, J.M, Liu, X.-Y, Volanakis, J.E, Narayana, S.V.L.
Deposit date:1998-06-18
Release date:1999-06-22
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of native and complexed complement factor D: implications of the atypical His57 conformation and self-inhibitory loop in the regulation of specific serine protease activity.
J.Mol.Biol., 282, 1998
6IHA
DownloadVisualize
BU of 6iha by Molmil
antibacterial peptide SibaCec-A
Descriptor: SibaCec-A
Authors:Jing, H, Lin, W.
Deposit date:2018-09-29
Release date:2019-10-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:antibacterial peptide SibaCec-A
To Be Published
5Y7G
DownloadVisualize
BU of 5y7g by Molmil
Crystal structure of paFAN1 bound to 1nt 5'flap DNA with gap
Descriptor: CALCIUM ION, DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ...
Authors:Cho, Y, Jin, H.
Deposit date:2017-08-17
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease.
J. Biol. Chem., 293, 2018
6JPK
DownloadVisualize
BU of 6jpk by Molmil
Crystal structure of S. pombe aspartate aminotransferase
Descriptor: Aspartate aminotransferase, cytoplasmic, GLYCEROL, ...
Authors:Jin, H, Chang, J.H.
Deposit date:2019-03-27
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Crystal structure of L-aspartate aminotransferase from Schizosaccharomyces pombe.
Plos One, 14, 2019
4V5E
DownloadVisualize
BU of 4v5e by Molmil
Insights into translational termination from the structure of RF2 bound to the ribosome
Descriptor: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Weixlbaumer, A, Jin, H, Neubauer, C, Voorhees, R.M, Petry, S, Kelley, A.C, Ramakrishnan, V.
Deposit date:2009-04-30
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Insights Into Translational Termination from the Structure of Rf2 Bound to the Ribosome.
Science, 322, 2008
6L2W
DownloadVisualize
BU of 6l2w by Molmil
Crystal structure of a novel fold protein Gp72 from the freshwater cyanophage Mic1
Descriptor: freshwater cyanophage protein
Authors:Wang, Y, Jin, H, Yang, F, Jiang, Y.L, Zhao, Y.Y, Chen, Z.P, Li, W.F, Chen, Y, Zhou, C.Z, Li, Q.
Deposit date:2019-10-07
Release date:2020-05-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Crystal structure of a novel fold protein Gp72 from the freshwater cyanophage Mic1.
Proteins, 88, 2020
7RR5
DownloadVisualize
BU of 7rr5 by Molmil
Structure of ribosomal complex bound with Rbg1/Tma46
Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
Authors:Zeng, F, Li, X, Pires-Alves, M, Chen, X, Hawk, C.W, Jin, H.
Deposit date:2021-08-09
Release date:2021-11-10
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells.
Cell Rep, 37, 2021
5U4I
DownloadVisualize
BU of 5u4i by Molmil
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zeng, F, Chen, Y, Remis, J, Shekhar, M, Phillips, J.C, Tajkhorshid, E, Jin, H.
Deposit date:2016-12-04
Release date:2017-01-11
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome.
Nature, 541, 2017
5U4J
DownloadVisualize
BU of 5u4j by Molmil
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S12, ...
Authors:Zeng, F, Chen, Y, Remis, J, Shekhar, M, Phillips, J.C, Tajkhorshid, E, Jin, H.
Deposit date:2016-12-04
Release date:2017-01-11
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome.
Nature, 541, 2017
6C5L
DownloadVisualize
BU of 6c5l by Molmil
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zeng, F, Jin, H.
Deposit date:2018-01-16
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
Sci Rep, 8, 2018
6C4I
DownloadVisualize
BU of 6c4i by Molmil
Conformation of methylated GGQ in the peptidyl transferase center during translation termination
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zeng, F, Jin, H.
Deposit date:2018-01-12
Release date:2018-02-21
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
Sci Rep, 8, 2018
6C4H
DownloadVisualize
BU of 6c4h by Molmil
Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)
Descriptor: 23S rRNA, 50S ribosomal protein L16, 50S ribosomal protein L2, ...
Authors:Zeng, F, Jin, H.
Deposit date:2018-01-12
Release date:2018-02-21
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
Sci Rep, 8, 2018

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon