Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4RZT
DownloadVisualize
BU of 4rzt by Molmil
Lac repressor engineered to bind sucralose, sucralose-bound tetramer
Descriptor: 4-chloro-4-deoxy-alpha-D-galactopyranose-(1-2)-1,6-dichloro-1,6-dideoxy-beta-D-fructofuranose, Lac repressor
Authors:Arbing, M.A, Cascio, D, Sawaya, M.R, Kosuri, S, Church, G.M.
Deposit date:2014-12-24
Release date:2015-12-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Engineering an allosteric transcription factor to respond to new ligands.
Nat.Methods, 13, 2016
4RZS
DownloadVisualize
BU of 4rzs by Molmil
Lac repressor engineered to bind sucralose, unliganded tetramer
Descriptor: GLYCEROL, Lac repressor
Authors:Arbing, M.A, Cascio, D, Kosuri, S, Church, G.M.
Deposit date:2014-12-24
Release date:2015-12-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Engineering an allosteric transcription factor to respond to new ligands.
Nat.Methods, 13, 2016
5C2C
DownloadVisualize
BU of 5c2c by Molmil
GWS1B RubisCO: Form II RubisCO derived from uncultivated Gallionellacea species (unliganded form)
Descriptor: CHLORIDE ION, Form II RubisCO, MAGNESIUM ION
Authors:Arbing, M.A, Varaljay, V.A, Satagopan, S, Tabita, F.R.
Deposit date:2015-06-15
Release date:2015-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria.
Environ.Microbiol., 18, 2016
5C2G
DownloadVisualize
BU of 5c2g by Molmil
GWS1B RubisCO: Form II RubisCO derived from uncultivated Gallionellacea species (CABP-bound).
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, Form II RubisCO, MAGNESIUM ION
Authors:Arbing, M.A, Varaljay, V.A, Satagopan, S, Tabita, F.R.
Deposit date:2015-06-15
Release date:2015-12-16
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria.
Environ.Microbiol., 18, 2016
5CYU
DownloadVisualize
BU of 5cyu by Molmil
Structure of the soluble domain of EccB1 from the Mycobacterium smegmatis ESX-1 secretion system.
Descriptor: Conserved membrane protein
Authors:Arbing, M.A, Chan, S, Kahng, S, Kim, J, Eisenberg, D.S, TB Structural Genomics Consortium (TBSGC)
Deposit date:2015-07-30
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system.
Bmc Struct.Biol., 16, 2016
3MML
DownloadVisualize
BU of 3mml by Molmil
Allophanate Hydrolase Complex from Mycobacterium smegmatis, Msmeg0435-Msmeg0436
Descriptor: Allophanate hydrolase subunit 1, Allophanate hydrolase subunit 2, CHLORIDE ION
Authors:Kaufmann, M, Chernishof, I, Shin, A, Germano, D, Sawaya, M.R, Waldo, G.S, Arbing, M.A, Perry, J, Eisenberg, D, Integrated Center for Structure and Function Innovation (ISFI), TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-04-20
Release date:2010-04-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Allphanate Hydrolase Complex from M. smegmatis, Msmeg0435-Msmeg0436
To be Published
3K6V
DownloadVisualize
BU of 3k6v by Molmil
M. acetivorans Molybdate-Binding Protein (ModA) in Citrate-Bound Open Form
Descriptor: CITRIC ACID, Solute-binding protein MA_0280
Authors:Chan, S, Giuroiu, I, Chernishof, I, Sawaya, M.R, Chiang, J, Gunsalus, R.P, Arbing, M.A, Perry, L.J.
Deposit date:2009-10-09
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Apo and ligand-bound structures of ModA from the archaeon Methanosarcina acetivorans
Acta Crystallogr.,Sect.F, 66, 2010
3K6W
DownloadVisualize
BU of 3k6w by Molmil
Apo and ligand bound structures of ModA from the archaeon Methanosarcina acetivorans
Descriptor: MOLYBDATE ION, SULFATE ION, Solute-binding protein MA_0280
Authors:Chan, S, Chernishof, I, Giuroiu, I, Sawaya, M.R, Chiang, J, Gunsalus, R.P, Arbing, M.A, Perry, L.J.
Deposit date:2009-10-09
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Apo and ligand-bound structures of ModA from the archaeon Methanosarcina acetivorans
Acta Crystallogr.,Sect.F, 66, 2010
3K6X
DownloadVisualize
BU of 3k6x by Molmil
M. acetivorans Molybdate-Binding Protein (ModA) in Molybdate-Bound Close Form with 2 Molecules in Asymmetric Unit Forming Beta Barrel
Descriptor: MOLYBDATE ION, SULFATE ION, Solute-binding protein MA_0280
Authors:Chan, S, Chernishof, I, Giuroiu, I, Sawaya, M.R, Chiang, J, Gunsalus, R.P, Arbing, M.A, Perry, L.J.
Deposit date:2009-10-09
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Apo and ligand-bound structures of ModA from the archaeon Methanosarcina acetivorans
Acta Crystallogr.,Sect.F, 66, 2010
3K6U
DownloadVisualize
BU of 3k6u by Molmil
M. acetivorans Molybdate-Binding Protein (ModA) in Unliganded Open Form
Descriptor: Solute-binding protein MA_0280
Authors:Chan, S, Giuroiu, I, Chernishof, I, Sawaya, M.R, Chiang, J, Gunsalus, R.P, Arbing, M.A, Perry, L.J.
Deposit date:2009-10-09
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Apo and ligand-bound structures of ModA from the archaeon Methanosarcina acetivorans
Acta Crystallogr.,Sect.F, 66, 2010
2KAV
DownloadVisualize
BU of 2kav by Molmil
Solution structure of the human Voltage-gated Sodium Channel, brain isoform (Nav1.2)
Descriptor: Sodium channel protein type 2 subunit alpha
Authors:Miloushev, V.Z, Levine, J.A, Arbing, M.A, Hunt, J.F, Pitt, G.S, Palmer, A.G.
Deposit date:2008-11-15
Release date:2009-01-06
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the NaV1.2 C-terminal EF-hand domain.
J.Biol.Chem., 284, 2009
5DLB
DownloadVisualize
BU of 5dlb by Molmil
Crystal structure of chaperone EspG3 of ESX-3 type VII secretion system from Mycobacterium marinum M
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, PLATINUM (II) ION, ...
Authors:Chan, S, Arbing, M.A, Kim, J, Kahng, S, Sawaya, M.R, Eisenberg, D.S, TB Structural Genomics Consortium (TBSGC)
Deposit date:2015-09-04
Release date:2015-09-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Variability of EspG Chaperones from Mycobacterial ESX-1, ESX-3, and ESX-5 Type VII Secretion Systems.
J. Mol. Biol., 431, 2019
2H28
DownloadVisualize
BU of 2h28 by Molmil
Crystal structure of YeeU from E. coli. Northeast Structural Genomics target ER304
Descriptor: CHLORIDE ION, GLYCEROL, Hypothetical protein yeeU, ...
Authors:Arbing, M, Su, M, Benach, J, Karpowich, N.K, Jiang, M, Xiao, R, Cunningham, K, Ma, L.-C, Chen, C.X, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-05-18
Release date:2006-07-18
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Phd-Doc, HigA, and YeeU Establish Multiple Evolutionary Links between Microbial Growth-Regulating Toxin-Antitoxin Systems.
Structure, 18, 2010
2INW
DownloadVisualize
BU of 2inw by Molmil
Crystal structure of Q83JN9 from Shigella flexneri at high resolution. Northeast Structural Genomics Consortium target SfR137.
Descriptor: PHOSPHATE ION, Putative structural protein
Authors:Kuzin, A.P, Su, M, Jayaraman, S, Vorobiev, S.M, Wang, D, Jiang, M, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-10-09
Release date:2006-10-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structures of Phd-Doc, HigA, and YeeU Establish Multiple Evolutionary Links between Microbial Growth-Regulating Toxin-Antitoxin Systems.
Structure, 18, 2010
3UID
DownloadVisualize
BU of 3uid by Molmil
Crystal Structure of Protein Ms6760 from Mycobacterium smegmatis
Descriptor: Putative uncharacterized protein
Authors:Bajaj, R.A, Miallau, L, Cascio, D, Arbing, M, Eisenberg, D, TB Structural Genomics Consortium (TBSGC)
Deposit date:2011-11-04
Release date:2011-11-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.571 Å)
Cite:Crystal structure of the toxin Msmeg_6760, the structural homolog of Mycobacterium tuberculosis Rv2035, a novel type II toxin involved in the hypoxic response.
Acta Crystallogr F Struct Biol Commun, 72, 2016
8UJA
DownloadVisualize
BU of 8uja by Molmil
T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks
Descriptor: T33-fn10: engineered DrsE like sulfur reductase, T33-fn10: engineered enoyl-CoA hydratase/isomerase
Authors:Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-11
Release date:2024-03-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (6 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
4KK7
DownloadVisualize
BU of 4kk7 by Molmil
Structure of EccB1 from the type VII (ESX-1) secretion system of Mycobacterium tuberculosis.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ESX-1 secretion system protein eccB1, GLYCEROL, ...
Authors:Korotkov, K.V, Evans, T.J.
Deposit date:2013-05-05
Release date:2013-06-19
Last modified:2016-03-23
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system.
Bmc Struct.Biol., 16, 2016
3OEI
DownloadVisualize
BU of 3oei by Molmil
Crystal structure of Mycobacterium tuberculosis RelJK (Rv3357-Rv3358-RelBE3)
Descriptor: CITRATE ANION, RelJ (Antitoxin Rv3357), RelK (Toxin Rv3358)
Authors:Miallau, L, Cascio, D, Eisenberg, D, TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-08-12
Release date:2011-03-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.145 Å)
Cite:Comparative proteomics identifies the cell-associated lethality of M. tuberculosis RelBE-like toxin-antitoxin complexes.
Structure, 21, 2013
8UMP
DownloadVisualize
BU of 8ump by Molmil
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml35-redesigned-CutA-fold, T33-ml35-redesigned-TPR-domain-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-18
Release date:2023-11-15
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8UF0
DownloadVisualize
BU of 8uf0 by Molmil
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml23-redesigned-CutA-fold, T33-ml23-redesigned-tandem-BMC-T-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-03
Release date:2023-11-15
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.02 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
4L4W
DownloadVisualize
BU of 4l4w by Molmil
Structure of EspG3 chaperone from the type VII (ESX-3) secretion system
Descriptor: EspG3
Authors:Korotkov, K.V.
Deposit date:2013-06-09
Release date:2014-06-11
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.036 Å)
Cite:Structural Variability of EspG Chaperones from Mycobacterial ESX-1, ESX-3, and ESX-5 Type VII Secretion Systems.
J. Mol. Biol., 431, 2019
4KV3
DownloadVisualize
BU of 4kv3 by Molmil
Ubiquitin-like domain of the Mycobacterium tuberculosis type VII secretion system protein EccD1 as maltose-binding protein fusion
Descriptor: Chimera fusion protein of ESX-1 secretion system protein eccD1 and Maltose-binding periplasmic protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Korotkov, K.V, Evans, T.J.
Deposit date:2013-05-22
Release date:2014-04-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system.
Bmc Struct.Biol., 16, 2016
8UI2
DownloadVisualize
BU of 8ui2 by Molmil
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml28-redesigned-CutA-fold, T33-ml28-redesigned-tandem-BMC-T-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-09
Release date:2024-03-06
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8UMR
DownloadVisualize
BU of 8umr by Molmil
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml35-redesigned-CutA-fold, T33-ml35-redesigned-TPR-domain-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-18
Release date:2024-03-06
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (4.42 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8UN1
DownloadVisualize
BU of 8un1 by Molmil
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml23-redesigned-CutA-fold, T33-ml23-redesigned-tandem-BMC-T-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-18
Release date:2024-03-06
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon