2E27
| Crystal structure of Fv fragment of anti-ciguatoxin antibody complexed with ABC-ring of ciguatoxin | 分子名称: | 3,7:6,10:9,14-TRIANHYDRO-2,5,11,12,13-PENTADEOXY-4-O-(METHOXYMETHYL)-L-ARABINO-L-ALLO-TETRADEC-12-ENONIC ACID, DIMETHYL SULFOXIDE, GLYCEROL, ... | 著者 | Yokota, A, Tanaka, Y, Tsumoto, K. | 登録日 | 2006-11-08 | 公開日 | 2007-11-13 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Critical contribution of aromatic rings to specific recognition of polyether rings. The case of ciguatoxin CTX3C-ABC and its specific antibody 1C49. J.Biol.Chem., 283, 2008
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8J81
| MDM2 bound with a peptoid | 分子名称: | (2S)-2-[[(2S)-2-[(6-chloranyl-1H-indol-3-yl)methyl-[(2S)-2-[[(2S)-2-[ethanoyl-(phenylmethyl)amino]propanoyl]-methyl-amino]propanoyl]amino]propanoyl]-methyl-amino]-N-(3,3-dimethylbutyl)-N-[(2S)-1-oxidanylidene-1-piperazin-1-yl-propan-2-yl]propanamide, CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2 | 著者 | Yokomine, M, Fukuda, Y, Ago, H, Matsuura, H, Ueno, G, Nagatoishi, S, Yamamoto, M, Tsumoto, K, Jumpei, M, Sando, S. | 登録日 | 2023-04-28 | 公開日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | A structural and physicochemical study of how a peptoid binds to a protein To Be Published
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4WDC
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4WY7
| Crystal structure of recombinant 4E10 expressed in Escherichia coli with epitope bound | 分子名称: | Envelope glycoprotein gp160, Fab 4E10 Heavy chain, Fab 4E10Light chain, ... | 著者 | Rujas, E, Morante, K, Tsumoto, K, Nieva, J.L, Caaveiro, J.M.M. | 登録日 | 2014-11-16 | 公開日 | 2015-03-25 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The Atomic Structure of the HIV-1 gp41 Transmembrane Domain and Its Connection to the Immunogenic Membrane-proximal External Region. J.Biol.Chem., 290, 2015
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4W4O
| High-resolution crystal structure of Fc bound to its human receptor Fc-gamma-RI | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, GLYCEROL, ... | 著者 | Caaveiro, J.M.M, Kiyoshi, M, Tsumoto, K. | 登録日 | 2014-08-15 | 公開日 | 2015-04-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural basis for binding of human IgG1 to its high-affinity human receptor Fc gamma RI Nat Commun, 6, 2015
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4W4N
| Crystal structure of human Fc at 1.80 A | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ... | 著者 | Caaveiro, J.M.M, Kiyoshi, M, Tsumoto, K. | 登録日 | 2014-08-15 | 公開日 | 2015-04-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural basis for binding of human IgG1 to its high-affinity human receptor Fc gamma RI Nat Commun, 6, 2015
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3GP7
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3QUG
| Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Gallium-porphyrin | 分子名称: | GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING GA, ... | 著者 | Moriwaki, Y, Caaveiro, J.M.M, Tsumoto, K. | 登録日 | 2011-02-24 | 公開日 | 2011-03-30 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus. Biochemistry, 50, 2011
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3QUH
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8HLB
| Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2 | 分子名称: | TR109 heavy chain, TR109 light chain, TR92 heavy chain, ... | 著者 | Akiba, H, Fujita, J, Ise, T, Nishiyama, K, Miyata, T, Kato, T, Namba, K, Ohno, H, Kamada, H, Nagata, S, Tsumoto, K. | 登録日 | 2022-11-29 | 公開日 | 2023-10-04 | 実験手法 | ELECTRON MICROSCOPY (3.63 Å) | 主引用文献 | Development of a 1:1-binding biparatopic anti-TNFR2 antagonist by reducing signaling activity through epitope selection. Commun Biol, 6, 2023
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4TSO
| Crystal structure of FraC with DHPC bound (crystal form I) | 分子名称: | 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Fragaceatoxin C, PHOSPHATE ION, ... | 著者 | Caaveiro, J.M.M, Tanaka, K, Tsumoto, K. | 登録日 | 2014-06-19 | 公開日 | 2015-03-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis for self-assembly of a cytolytic pore lined by protein and lipid Nat Commun, 6, 2015
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4TSP
| Crystal structure of FraC with DHPC bound (crystal form II) | 分子名称: | 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Fragaceatoxin C, PHOSPHATE ION, ... | 著者 | Caaveiro, J.M.M, Tanaka, K, Tsumoto, K. | 登録日 | 2014-06-19 | 公開日 | 2015-03-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Structural basis for self-assembly of a cytolytic pore lined by protein and lipid Nat Commun, 6, 2015
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4TSL
| Crystal structure of FraC with POC bound (crystal form I) | 分子名称: | ACETATE ION, FORMIC ACID, Fragaceatoxin C, ... | 著者 | Caaveiro, J.M.M, Tanaka, K, Tsumoto, K. | 登録日 | 2014-06-19 | 公開日 | 2015-03-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Structural basis for self-assembly of a cytolytic pore lined by protein and lipid Nat Commun, 6, 2015
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4TSY
| Crystal structure of FraC with lipids | 分子名称: | 2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl-dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, Fragaceatoxin C, HEPTANE-1,2,3-TRIOL, ... | 著者 | Caaveiro, J.M.M, Tanaka, K, Tsumoto, K. | 登録日 | 2014-06-19 | 公開日 | 2015-03-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.14 Å) | 主引用文献 | Structural basis for self-assembly of a cytolytic pore lined by protein and lipid Nat Commun, 6, 2015
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4TSN
| Crystal structure of FraC with POC bound (crystal form II) | 分子名称: | ACETATE ION, Fragaceatoxin C, GLYCEROL, ... | 著者 | Caaveiro, J.M.M, Tanaka, K, Tsumoto, K. | 登録日 | 2014-06-19 | 公開日 | 2015-03-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.57 Å) | 主引用文献 | Structural basis for self-assembly of a cytolytic pore lined by protein and lipid Nat Commun, 6, 2015
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4TSQ
| Crystal structure of FraC with DHPC bound (crystal form III) | 分子名称: | 1,2-dihexanoyl-sn-glycero-3-phosphocholine, CHLORIDE ION, Fragaceatoxin C, ... | 著者 | Caaveiro, J.M.M, Tanaka, K, Tsumoto, K. | 登録日 | 2014-06-19 | 公開日 | 2015-03-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Structural basis for self-assembly of a cytolytic pore lined by protein and lipid Nat Commun, 6, 2015
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1UAC
| Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME | 分子名称: | Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region | 著者 | Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K. | 登録日 | 2003-03-08 | 公開日 | 2004-03-23 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10 J.BIOL.CHEM., 278, 2003
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1C08
| CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX | 分子名称: | ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME | 著者 | Shiroishi, M, Kondo, H, Matsushima, M, Tsumoto, K, Kumagai, I. | 登録日 | 1999-07-15 | 公開日 | 2000-07-19 | 最終更新日 | 2023-05-31 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces. J.Biol.Chem., 274, 1999
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1FKQ
| RECOMBINANT GOAT ALPHA-LACTALBUMIN T29V | 分子名称: | ALPHA-LACTALBUMIN, CALCIUM ION | 著者 | Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I. | 登録日 | 2000-08-10 | 公開日 | 2001-02-14 | 最終更新日 | 2021-11-03 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Contribution of Thr29 to the thermodynamic stability of goat alpha-lactalbumin as determined by experimental and theoretical approaches. Proteins, 45, 2001
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1FKV
| RECOMBINANT GOAT ALPHA-LACTALBUMIN T29I | 分子名称: | ALPHA-LACTALBUMIN, CALCIUM ION | 著者 | Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I. | 登録日 | 2000-08-10 | 公開日 | 2001-02-14 | 最終更新日 | 2021-11-03 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Contribution of Thr29 to the thermodynamic stability of goat alpha-lactalbumin as determined by experimental and theoretical approaches. Proteins, 45, 2001
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8GQ1
| HyHEL10 Fab complexed with hen egg lysozyme carrying arginine cluster in framework region of light chain. | 分子名称: | Heavy Chain of HyHel10 Antibody Fragment (Fab), Light Chain of HyHel10 Antibody Fragment (Fab), Lysozyme C, ... | 著者 | Matsuura, H, Hirata, K, Sakai, N, Nakakido, M, Tsumoto, K. | 登録日 | 2022-08-28 | 公開日 | 2023-08-30 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.13 Å) | 主引用文献 | Arginine cluster introduction on framework region in anti-lysozyme antibody improved association rate constant by changing conformational diversity of CDR loops. Protein Sci., 32, 2023
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4WD4
| Crystal structure of human HO1 H25R | 分子名称: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Caaveiro, J.M.M, Morante, K, Sigala, P, Tsumoto, K. | 登録日 | 2014-09-06 | 公開日 | 2015-09-09 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.95 Å) | 主引用文献 | In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis Biochemistry, 55, 2016
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5X08
| Crystal structure of broadly neutralizing anti-HIV-1 antibody 4E10, mutant Npro, with peptide bound | 分子名称: | ACETATE ION, CHLORIDE ION, Envelope glycoprotein gp160, ... | 著者 | Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K. | 登録日 | 2017-01-20 | 公開日 | 2017-04-05 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.49 Å) | 主引用文献 | Functional Contacts between MPER and the Anti-HIV-1 Broadly Neutralizing Antibody 4E10 Extend into the Core of the Membrane J. Mol. Biol., 429, 2017
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1HMK
| RECOMBINANT GOAT ALPHA-LACTALBUMIN | 分子名称: | CALCIUM ION, PROTEIN (ALPHA-LACTALBUMIN) | 著者 | Horii, K, Matsushima, M, Tsumoto, K, Kumagai, I. | 登録日 | 1998-11-26 | 公開日 | 1999-11-26 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Effect of the extra n-terminal methionine residue on the stability and folding of recombinant alpha-lactalbumin expressed in Escherichia coli. J.Mol.Biol., 285, 1999
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1IC4
| CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX | 分子名称: | IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C | 著者 | Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I. | 登録日 | 2001-03-30 | 公開日 | 2001-07-18 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex. J.Biol.Chem., 276, 2001
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