Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6CKH
DownloadVisualize
BU of 6ckh by Molmil
Manduca sexta Peptidoglycan Recognition Protein-1
Descriptor: Peptidoglycan-recognition protein
Authors:Hu, Y.
Deposit date:2018-02-28
Release date:2019-06-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The three-dimensional structure and recognition mechanism of Manduca sexta peptidoglycan recognition protein-1.
Insect Biochem.Mol.Biol., 108, 2019
6UI4
DownloadVisualize
BU of 6ui4 by Molmil
Crystal structure of phenamacril-bound F. graminearum myosin I
Descriptor: Calmodulin, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Zhou, Y, Zhou, X.E, Gong, Y, Zhu, Y, Xu, H.E, Zhou, M, Melcher, K, Zhang, F.
Deposit date:2019-09-30
Release date:2020-03-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of Fusarium myosin I inhibition by phenamacril.
Plos Pathog., 16, 2020
8G05
DownloadVisualize
BU of 8g05 by Molmil
Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
Descriptor: 6-(octylamino)pyrimidine-2,4(3H,5H)-dione, CHOLESTEROL, G-protein coupled receptor 84, ...
Authors:Zhang, X, Wang, Y.J, Li, X, Liu, G.B, Gong, W.M, Zhang, C.
Deposit date:2023-01-31
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Pro-phagocytic function and structural basis of GPR84 signaling.
Nat Commun, 14, 2023
4RZH
DownloadVisualize
BU of 4rzh by Molmil
Crystal structure of FabG from Synechocystis sp. PCC 6803
Descriptor: 3-oxoacyl-[acyl-carrier protein] reductase
Authors:Liu, Y, Xue, S.
Deposit date:2014-12-22
Release date:2015-09-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-directed construction of a high-performance version of the enzyme FabG from the photosynthetic microorganism Synechocystis sp. PCC 6803.
Febs Lett., 589, 2015
4J53
DownloadVisualize
BU of 4j53 by Molmil
Crystal structure of PLK1 in complex with TAK-960
Descriptor: 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-2-fluoro-5-methoxy-N-(1-methylpiperidin-4-yl)benzamide, ACETATE ION, Serine/threonine-protein kinase PLK1, ...
Authors:Hosfield, D.J, Skene, R.J.
Deposit date:2013-02-07
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Discovery of TAK-960: An orally available small molecule inhibitor of polo-like kinase 1 (PLK1).
Bioorg.Med.Chem.Lett., 23, 2013
4J52
DownloadVisualize
BU of 4j52 by Molmil
Crystal structure of PLK1 in complex with a pyrimidodiazepinone inhibitor
Descriptor: 4-{[(7R)-9-cyclopentyl-7-ethenyl-7-fluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl]amino}-3-methoxy-N-(4-methylpiperazin-1-yl)benzamide, ACETATE ION, Serine/threonine-protein kinase PLK1, ...
Authors:Hosfield, D.J, Skene, R.J.
Deposit date:2013-02-07
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of TAK-960: An orally available small molecule inhibitor of polo-like kinase 1 (PLK1).
Bioorg.Med.Chem.Lett., 23, 2013
2KCJ
DownloadVisualize
BU of 2kcj by Molmil
solution structure of FAPP1 PH domain
Descriptor: Pleckstrin homology domain-containing family A member 3
Authors:Lenoir, M, Coskun, U, James, J, Simons, K, Overduin, M.
Deposit date:2008-12-22
Release date:2009-12-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural basis of wedging the Golgi membrane by FAPP pleckstrin homology domains.
Embo Rep., 11, 2010
8HIL
DownloadVisualize
BU of 8hil by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom
Descriptor: DNA-dependent RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, DNA-directed RNA polymerase subunit, ...
Authors:Du, X, Xie, G, Hu, H, Du, J.
Deposit date:2022-11-20
Release date:2023-03-22
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
8HIM
DownloadVisualize
BU of 8him by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom
Descriptor: DNA (34-MER), DNA-directed RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, ...
Authors:Hu, H, Xie, G, Du, X, Du, J.
Deposit date:2022-11-21
Release date:2023-03-22
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
6IP0
DownloadVisualize
BU of 6ip0 by Molmil
Crystal structure of Arabidopsis thaliana JMJ13 catalytic domain in complex with AKG
Descriptor: 2-OXOGLUTARIC ACID, NICKEL (II) ION, SULFATE ION, ...
Authors:Hu, H, Du, J.
Deposit date:2018-11-01
Release date:2019-04-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor.
Nat Commun, 10, 2019
6IP4
DownloadVisualize
BU of 6ip4 by Molmil
Crystal structure of Arabidopsis thaliana JMJ13 catalytic domain in complex with NOG and an H3K27me3 peptide
Descriptor: Arabidopsis JMJ13, Histone H3.2, N-OXALYLGLYCINE, ...
Authors:Hu, H, Du, J.
Deposit date:2018-11-02
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor.
Nat Commun, 10, 2019
7KRN
DownloadVisualize
BU of 7krn by Molmil
Structure of SARS-CoV-2 backtracked complex bound to nsp13 helicase - nsp13(1)-BTC
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ...
Authors:Chen, J, Malone, B, Campbell, E.A, Darst, S.A.
Deposit date:2020-11-20
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
7KRP
DownloadVisualize
BU of 7krp by Molmil
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - BTC (local refinement)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHAPSO, MAGNESIUM ION, ...
Authors:Chen, J, Malone, B, Campbell, E.A, Darst, S.A.
Deposit date:2020-11-20
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
7KRO
DownloadVisualize
BU of 7kro by Molmil
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - nsp13(2)-BTC
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ...
Authors:Chen, J, Malone, B, Campbell, E.A, Darst, S.A.
Deposit date:2020-11-20
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
5YKO
DownloadVisualize
BU of 5yko by Molmil
Crystal structure of Arabidopsis thaliana JMJ14 catalytic domain in complex with NOG and H3K4me3 peptide
Descriptor: H3(1-10)K4me3 peptide, N-OXALYLGLYCINE, NICKEL (II) ION, ...
Authors:Yang, Z, Du, J.
Deposit date:2017-10-15
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
5YKN
DownloadVisualize
BU of 5ykn by Molmil
crystal structure of Arabidopsis thaliana JMJ14 catalytic domain
Descriptor: NICKEL (II) ION, Probable lysine-specific demethylase JMJ14, ZINC ION
Authors:Yang, Z, Du, J.
Deposit date:2017-10-15
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
8H2J
DownloadVisualize
BU of 8h2j by Molmil
Structure of Acb2 complexed with 3',3'-cGAMP
Descriptor: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, p26
Authors:Feng, Y, Cao, X.L.
Deposit date:2022-10-06
Release date:2023-02-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Bacteriophages inhibit and evade cGAS-like immune function in bacteria.
Cell, 186, 2023
8H2X
DownloadVisualize
BU of 8h2x by Molmil
Structure of Acb2
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, p26
Authors:Feng, Y, Cao, X.L.
Deposit date:2022-10-07
Release date:2023-02-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Bacteriophages inhibit and evade cGAS-like immune function in bacteria.
Cell, 186, 2023
8H39
DownloadVisualize
BU of 8h39 by Molmil
Structure of Acb2 complexed with c-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, 1,2-ETHANEDIOL, p26
Authors:Feng, Y, Cao, X.L.
Deposit date:2022-10-08
Release date:2023-02-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Bacteriophages inhibit and evade cGAS-like immune function in bacteria.
Cell, 186, 2023
6MFE
DownloadVisualize
BU of 6mfe by Molmil
Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0000773 (Compound 11g) Complex
Descriptor: (2-nitro-4-{[(3S)-1-{[4-(trifluoromethoxy)phenyl]methyl}pyrrolidin-3-yl]amino}phenyl)methanol, ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase oxamniquine resistance protein
Authors:Taylor, A.B.
Deposit date:2018-09-10
Release date:2018-10-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.444 Å)
Cite:Design, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents.
ACS Med Chem Lett, 9, 2018
6B52
DownloadVisualize
BU of 6b52 by Molmil
Schistosoma haematobium (Blood Fluke) Sulfotransferase/Oxamniquine Complex, Y54F Mutant
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase, {(2S)-7-nitro-2-[(propan-2-ylamino)methyl]-1,2,3,4-tetrahydroquinolin-6-yl}methanol
Authors:Taylor, A.B.
Deposit date:2017-09-27
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Why does oxamniquine kill Schistosoma mansoni and not S. haematobium and S. japonicum?
Int.J.Parasitol., 2020
6BDP
DownloadVisualize
BU of 6bdp by Molmil
Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0000071 (Compound 9c) Complex
Descriptor: (4-{[(3R)-1-benzylpyrrolidin-3-yl]amino}-2-nitrophenyl)methanol, ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase oxamniquine resistance protein
Authors:Taylor, A.B.
Deposit date:2017-10-24
Release date:2018-10-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Design, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents.
ACS Med Chem Lett, 9, 2018
6BDR
DownloadVisualize
BU of 6bdr by Molmil
Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0000206 (Compound 9f) Complex
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase oxamniquine resistance protein, [4-({(3R)-1-[(1H-indol-3-yl)methyl]pyrrolidin-3-yl}amino)-2-nitrophenyl]methanol
Authors:Taylor, A.B.
Deposit date:2017-10-24
Release date:2018-10-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Design, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents.
ACS Med Chem Lett, 9, 2018
6B4X
DownloadVisualize
BU of 6b4x by Molmil
Schistosoma mansoni (Blood Fluke) Sulfotransferase, F39Y Mutant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-3'-5'-DIPHOSPHATE, SODIUM ION, ...
Authors:Taylor, A.B.
Deposit date:2017-09-27
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Why does oxamniquine kill Schistosoma mansoni and not S. haematobium and S. japonicum?
Int.J.Parasitol., 2020
6BDS
DownloadVisualize
BU of 6bds by Molmil
Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0000204 (Compound 11f) Complex
Descriptor: (2-nitro-4-{[(3S)-1-{[4-(trifluoromethyl)phenyl]methyl}pyrrolidin-3-yl]amino}phenyl)methanol, ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase oxamniquine resistance protein
Authors:Taylor, A.B.
Deposit date:2017-10-24
Release date:2018-10-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Design, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents.
ACS Med Chem Lett, 9, 2018

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon