Crystal structure of Arabidopsis thaliana JMJ13 catalytic domain in complex with NOG and an H3K27me3 peptide

Summary for 6IP4

DescriptorArabidopsis JMJ13, Histone H3.2, NICKEL (II) ION, ... (7 entities in total)
Functional Keywordshistone modification, flowering, epigenetics, gene regulation
Biological sourceArabidopsis thaliana (Mouse-ear cress)
Total number of polymer chains2
Total molecular weight57473.42
Hu, H.,Du, J. (deposition date: 2018-11-02, release date: 2019-04-10)
Primary citation
Zheng, S.,Hu, H.,Ren, H.,Yang, Z.,Qiu, Q.,Qi, W.,Liu, X.,Chen, X.,Cui, X.,Li, S.,Zhou, B.,Sun, D.,Cao, X.,Du, J.
The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor.
Nat Commun, 10:1303-1303, 2019
PubMed: 30899015 (PDB entries with the same primary citation)
DOI: 10.1038/s41467-019-09310-x
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.245260 0.7% 11.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 6ip4
no rotation
Molmil generated image of 6ip4
rotated about x axis by 90°
Molmil generated image of 6ip4
rotated about y axis by 90°