6IP4
Crystal structure of Arabidopsis thaliana JMJ13 catalytic domain in complex with NOG and an H3K27me3 peptide
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue NI A 601 |
| Chain | Residue |
| A | HIS293 |
| A | GLU295 |
| A | HIS388 |
| A | OGA604 |
| A | HOH705 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 602 |
| Chain | Residue |
| A | CYS500 |
| A | CYS503 |
| A | CYS522 |
| A | HIS525 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 603 |
| Chain | Residue |
| A | CYS514 |
| A | CYS516 |
| A | HIS519 |
| A | CYS534 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | binding site for residue OGA A 604 |
| Chain | Residue |
| A | TYR231 |
| A | TYR282 |
| A | PHE290 |
| A | HIS293 |
| A | GLU295 |
| A | SER301 |
| A | ASN303 |
| A | HIS388 |
| A | NI601 |
| A | HOH705 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 605 |
| Chain | Residue |
| A | THR488 |
| A | SER492 |
| A | LEU542 |
| A | ARG543 |
| A | ASP544 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 606 |
| Chain | Residue |
| A | LEU427 |
| A | LEU428 |
| A | PRO429 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 607 |
| Chain | Residue |
| A | LYS196 |
| A | LYS196 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 608 |
| Chain | Residue |
| A | LYS153 |
| A | SER154 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 A 609 |
| Chain | Residue |
| A | ILE414 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 610 |
| Chain | Residue |
| A | HIS525 |
| A | ASP526 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 611 |
| Chain | Residue |
| A | ARG188 |
| A | LYS192 |
| A | LYS196 |
| A | ARG200 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 41 |
| Details | Domain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 170 |
| Details | Domain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 51 |
| Details | Zinc finger: {"description":"C5HC2","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"30899015","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"6IP0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6IP4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"30899015","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6IP0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6IP4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 5 |
| Details | Site: {"description":"Histone H3 binding","evidences":[{"source":"PubMed","id":"30899015","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6IP4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
