6IP4
Crystal structure of Arabidopsis thaliana JMJ13 catalytic domain in complex with NOG and an H3K27me3 peptide
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue NI A 601 |
| Chain | Residue |
| A | HIS293 |
| A | GLU295 |
| A | HIS388 |
| A | OGA604 |
| A | HOH705 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 602 |
| Chain | Residue |
| A | CYS500 |
| A | CYS503 |
| A | CYS522 |
| A | HIS525 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 603 |
| Chain | Residue |
| A | CYS514 |
| A | CYS516 |
| A | HIS519 |
| A | CYS534 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | binding site for residue OGA A 604 |
| Chain | Residue |
| A | TYR231 |
| A | TYR282 |
| A | PHE290 |
| A | HIS293 |
| A | GLU295 |
| A | SER301 |
| A | ASN303 |
| A | HIS388 |
| A | NI601 |
| A | HOH705 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 605 |
| Chain | Residue |
| A | THR488 |
| A | SER492 |
| A | LEU542 |
| A | ARG543 |
| A | ASP544 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 606 |
| Chain | Residue |
| A | LEU427 |
| A | LEU428 |
| A | PRO429 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 607 |
| Chain | Residue |
| A | LYS196 |
| A | LYS196 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 608 |
| Chain | Residue |
| A | LYS153 |
| A | SER154 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 A 609 |
| Chain | Residue |
| A | ILE414 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 610 |
| Chain | Residue |
| A | HIS525 |
| A | ASP526 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 611 |
| Chain | Residue |
| A | ARG188 |
| A | LYS192 |
| A | LYS196 |
| A | ARG200 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | SITE: Not N6-acetylated => ECO:0000269|PubMed:15598823 |
| Chain | Residue | Details |
| B | M3L27 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | SITE: Required for interaction with TSK => ECO:0000269|PubMed:35298257 |
| Chain | Residue | Details |
| B | ALA31 | |
| A | GLU295 | |
| A | HIS388 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:14712277, ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:17439305, ECO:0000269|PubMed:19503079, ECO:0000269|PubMed:24626927, ECO:0000269|PubMed:35298257 |
| Chain | Residue | Details |
| B | M3L27 | |
| A | CYS503 | |
| A | CYS514 | |
| A | CYS516 | |
| A | HIS519 | |
| A | CYS522 | |
| A | HIS525 | |
| A | CYS534 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:14610360, ECO:0000269|PubMed:15753571 |
| Chain | Residue | Details |
| B | SER28 | |
| A | ASP236 | |
| A | TYR282 | |
| A | ASP296 | |
| A | ASN402 |
