6IP4
Crystal structure of Arabidopsis thaliana JMJ13 catalytic domain in complex with NOG and an H3K27me3 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97776 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 128.794, 128.794, 230.642 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.367 - 2.600 |
R-factor | 0.2146 |
Rwork | 0.213 |
R-free | 0.24650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ip0 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.302 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.690 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.083 | 0.868 |
Rmeas | 0.091 | 0.953 |
Number of reflections | 33189 | 3316 |
<I/σ(I)> | 20.93 | 1.97 |
Completeness [%] | 93.2 | 95.1 |
Redundancy | 5.7 | 6 |
CC(1/2) | 0.615 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1M MES, pH 6.5, 8% dioxane, and 1.6M ammonium sulfate |