Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3NG5
DownloadVisualize
BU of 3ng5 by Molmil
Crystal Structure of V30M transthyretin complexed with (-)-epigallocatechin gallate (EGCG)
Descriptor: (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate, GLYCEROL, Transthyretin
Authors:Miyata, M, Nakamura, T, Ikemizu, S, Chirifu, M, Yamagata, Y, Kai, H.
Deposit date:2010-06-11
Release date:2010-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of green tea polyphenol(-)-epigallocatechin gallate (EGCG)-transthyretin complex reveals novel binding site distinct from thyroxine binding site
Biochemistry, 2010
3A4F
DownloadVisualize
BU of 3a4f by Molmil
Crystal Structure of Human Transthyretin (E54K)
Descriptor: GLYCEROL, SULFATE ION, Transthyretin
Authors:Miyata, M, Sato, T, Nakamura, T, Ikemizu, S, Yamagata, Y, Kai, H.
Deposit date:2009-07-06
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Role of the glutamic acid 54 residue in transthyretin stability and thyroxine binding
Biochemistry, 49, 2010
3A4E
DownloadVisualize
BU of 3a4e by Molmil
Crystal structure of Human Transthyretin (E54G)
Descriptor: GLYCEROL, SULFATE ION, Transthyretin
Authors:Miyata, M, Sato, T, Nakamura, T, Ikemizu, S, Yamagata, Y, Kai, H.
Deposit date:2009-07-06
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Role of the glutamic acid 54 residue in transthyretin stability and thyroxine binding
Biochemistry, 49, 2010
3A4D
DownloadVisualize
BU of 3a4d by Molmil
Crystal structure of Human Transthyretin (wild-type)
Descriptor: GLYCEROL, SULFATE ION, Transthyretin
Authors:Miyata, M.
Deposit date:2009-07-06
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of the Glutamic Acid 54 Residue in Transthyretin Stability and Thyroxine Binding
Biochemistry, 2009
8Z56
DownloadVisualize
BU of 8z56 by Molmil
Crystal structure of human Q140L-SIRT5 in complex with succinylated Prx1 fragment
Descriptor: CHLORIDE ION, GLYCEROL, NAD-dependent protein deacylase sirtuin-5, ...
Authors:Yokoyama, T, Takayama, Y.
Deposit date:2024-04-18
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:SIRT5 mutants reveal the role of conserved asparagine and glutamine residues in the NAD + -binding pocket.
Febs Lett., 598, 2024
8Z55
DownloadVisualize
BU of 8z55 by Molmil
Crystal structure of human SIRT5 in complex with succPrx1 and ADP ribose
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NAD-dependent protein deacylase sirtuin-5, mitochondrial, ...
Authors:Yokoyama, T, Takayama, Y.
Deposit date:2024-04-18
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:SIRT5 mutants reveal the role of conserved asparagine and glutamine residues in the NAD + -binding pocket.
Febs Lett., 598, 2024
8Z58
DownloadVisualize
BU of 8z58 by Molmil
Crystal structure of human N141V-SIRT5 in complex with succinylated Prx1 fragment
Descriptor: CHLORIDE ION, NAD-dependent protein deacylase sirtuin-5, mitochondrial, ...
Authors:Yokoyama, T, Takayama, Y.
Deposit date:2024-04-18
Release date:2024-10-09
Method:X-RAY DIFFRACTION (2.405 Å)
Cite:SIRT5 mutants reveal the role of conserved asparagine and glutamine residues in the NAD + -binding pocket.
Febs Lett., 598, 2024
8Z54
DownloadVisualize
BU of 8z54 by Molmil
Crystal structure of human SIRT5 in complex with succinylated Prx1 fragment
Descriptor: DIMETHYL SULFOXIDE, NAD-dependent protein deacylase sirtuin-5, mitochondrial, ...
Authors:Yokoyama, T, Takayama, Y.
Deposit date:2024-04-18
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:SIRT5 mutants reveal the role of conserved asparagine and glutamine residues in the NAD + -binding pocket.
Febs Lett., 598, 2024
8Z57
DownloadVisualize
BU of 8z57 by Molmil
Crystal structure of human Q140L-SIRT5 in complex with succinylated Prx1 fragment and ADP ribose
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NAD-dependent protein deacylase sirtuin-5, mitochondrial, ...
Authors:Yokoyama, T, Takayama, Y.
Deposit date:2024-04-18
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:SIRT5 mutants reveal the role of conserved asparagine and glutamine residues in the NAD + -binding pocket.
Febs Lett., 598, 2024
8JOK
DownloadVisualize
BU of 8jok by Molmil
Crystal structure of V30L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-07
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
8JQW
DownloadVisualize
BU of 8jqw by Molmil
Crystal structure of V30I mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-15
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
8JNU
DownloadVisualize
BU of 8jnu by Molmil
Crystal structure of V30G mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-06
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
8WGT
DownloadVisualize
BU of 8wgt by Molmil
Crystal structure of V30M-TTR in complex with compound 7
Descriptor: Transthyretin, [4,7-bis(chloranyl)-2-ethyl-1-benzofuran-3-yl]-[3,5-bis(iodanyl)-4-oxidanyl-phenyl]methanone
Authors:Yokoyama, T.
Deposit date:2023-09-22
Release date:2024-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.696 Å)
Cite:Development of Benziodarone Analogues with Enhanced Potency for Selective Binding to Transthyretin in Human Plasma.
J.Med.Chem., 67, 2024
8WGS
DownloadVisualize
BU of 8wgs by Molmil
Crystal structure of V30M-TTR in complex with compound 4
Descriptor: Transthyretin, [3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-4-iodanyl-1-benzofuran-3-yl)methanone
Authors:Yokoyama, T.
Deposit date:2023-09-22
Release date:2024-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Development of Benziodarone Analogues with Enhanced Potency for Selective Binding to Transthyretin in Human Plasma.
J.Med.Chem., 67, 2024
8WGU
DownloadVisualize
BU of 8wgu by Molmil
Crystal structure of V30M-TTR in complex with compound 20
Descriptor: Transthyretin, [3,5-bis(iodanyl)-4-oxidanyl-phenyl]-[2-ethyl-4,7-bis(fluoranyl)-1-benzofuran-3-yl]methanone
Authors:Yokoyama, T.
Deposit date:2023-09-22
Release date:2024-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.508 Å)
Cite:Development of Benziodarone Analogues with Enhanced Potency for Selective Binding to Transthyretin in Human Plasma.
J.Med.Chem., 67, 2024
7F4X
DownloadVisualize
BU of 7f4x by Molmil
Joint neutron and X-ray crystal structure of the nucleotide-binding domain of Hsp72 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock 70 kDa protein 1B, MAGNESIUM ION, ...
Authors:Yokoyama, T, Ostermann, A, Schrader, T.E.
Deposit date:2021-06-21
Release date:2022-06-29
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.6 Å), X-RAY DIFFRACTION
Cite:Neutron crystallographic analysis of the nucleotide-binding domain of Hsp72 in complex with ADP.
Iucrj, 9, 2022
8II1
DownloadVisualize
BU of 8ii1 by Molmil
Crystal structure of V30M-TTR in complex with BID
Descriptor: Benziodarone, Transthyretin
Authors:Yokoyama, T.
Deposit date:2023-02-24
Release date:2023-06-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.907 Å)
Cite:Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II4
DownloadVisualize
BU of 8ii4 by Molmil
Crystal structure of V30M-TTR in complex with 6-hydroxy BBM
Descriptor: Transthyretin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone
Authors:Yokoyama, T.
Deposit date:2023-02-24
Release date:2023-06-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II3
DownloadVisualize
BU of 8ii3 by Molmil
Crystal structure of V30M-TTR in complex with 6-hydroxy BID
Descriptor: Transthyretin, [3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone
Authors:Yokoyama, T.
Deposit date:2023-02-24
Release date:2023-06-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II2
DownloadVisualize
BU of 8ii2 by Molmil
Crystal structure of V30M-TTR in complex with BBM
Descriptor: CALCIUM ION, Transthyretin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-1-benzofuran-3-yl)methanone
Authors:Yokoyama, T.
Deposit date:2023-02-24
Release date:2023-06-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8IG1
DownloadVisualize
BU of 8ig1 by Molmil
Crystal structure of wild-type transthyretin in complex with rafoxanide
Descriptor: SODIUM ION, Transthyretin, ~{N}-[3-chloranyl-4-(4-chloranylphenoxy)phenyl]-3,5-bis(iodanyl)-2-oxidanyl-benzamide
Authors:Yokoyama, T.
Deposit date:2023-02-20
Release date:2023-08-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:Rafoxanide, a salicylanilide anthelmintic, interacts with human plasma protein transthyretin.
Febs J., 290, 2023
8W42
DownloadVisualize
BU of 8w42 by Molmil
X-ray crystal structure of V30M-TTR in complex with resveratrol
Descriptor: RESVERATROL, SODIUM ION, Transthyretin
Authors:Yokoyama, T.
Deposit date:2023-08-23
Release date:2023-11-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Resveratrol Derivatives Inhibit Transthyretin Fibrillization: Structural Insights into the Interactions between Resveratrol Derivatives and Transthyretin.
J.Med.Chem., 66, 2023
8W44
DownloadVisualize
BU of 8w44 by Molmil
X-ray crystal structure of V30M-TTR in complex with oxyresveratrol
Descriptor: SODIUM ION, Transthyretin, trans-oxyresveratrol
Authors:Yokoyama, T.
Deposit date:2023-08-23
Release date:2023-11-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Resveratrol Derivatives Inhibit Transthyretin Fibrillization: Structural Insights into the Interactions between Resveratrol Derivatives and Transthyretin.
J.Med.Chem., 66, 2023
8W46
DownloadVisualize
BU of 8w46 by Molmil
X-ray crystal structure of V30M-TTR in complex with pterostilbene
Descriptor: Pterostilbene, SODIUM ION, Transthyretin
Authors:Yokoyama, T.
Deposit date:2023-08-23
Release date:2023-11-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Resveratrol Derivatives Inhibit Transthyretin Fibrillization: Structural Insights into the Interactions between Resveratrol Derivatives and Transthyretin.
J.Med.Chem., 66, 2023
8W43
DownloadVisualize
BU of 8w43 by Molmil
X-ray crystal structure of V30M-TTR in complex with piceatannol
Descriptor: PICEATANNOL, SODIUM ION, Transthyretin
Authors:Yokoyama, T.
Deposit date:2023-08-23
Release date:2023-11-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.302 Å)
Cite:Resveratrol Derivatives Inhibit Transthyretin Fibrillization: Structural Insights into the Interactions between Resveratrol Derivatives and Transthyretin.
J.Med.Chem., 66, 2023

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon