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8RM5
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BU of 8rm5 by Molmil
Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, 5'SS oligo, NHP2-like protein 1, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R.
登録日2024-01-05
公開日2024-05-22
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (6.9 Å)
主引用文献Structural insights into the cross-exon to cross-intron spliceosome switch.
Nature, 630, 2024
8QXD
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BU of 8qxd by Molmil
Cryo-EM structure of the cross-exon pre-B complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, NHP2-like protein 1, N-terminally processed, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R.
登録日2023-10-24
公開日2024-05-22
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (9.6 Å)
主引用文献Structural insights into the cross-exon to cross-intron spliceosome switch.
Nature, 630, 2024
8R0A
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BU of 8r0a by Molmil
Cryo-EM structure of the cross-exon pre-B+5'ss complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, 5'ss oligo, NHP2-like protein 1, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R.
登録日2023-10-31
公開日2024-05-22
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (5.8 Å)
主引用文献Structural insights into the cross-exon to cross-intron spliceosome switch.
Nature, 630, 2024
8R08
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BU of 8r08 by Molmil
Cryo-EM structure of the cross-exon pre-B+AMPPNP complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, NHP2-like protein 1, N-terminally processed, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R.
登録日2023-10-31
公開日2024-05-22
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (6.1 Å)
主引用文献Structural insights into the cross-exon to cross-intron spliceosome switch.
Nature, 630, 2024
8QZS
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BU of 8qzs by Molmil
Cryo-EM structure of the cross-exon B-like complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Microfibrillar-associated protein 1, NHP2-like protein 1, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R.
登録日2023-10-29
公開日2024-05-22
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural insights into the cross-exon to cross-intron spliceosome switch.
Nature, 630, 2024
6MPQ
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BU of 6mpq by Molmil
1.95 Ang crystal structure of OXA-24/40 beta-lactamase in complex the inhibitor ETX2514
分子名称: (2S,5R)-1-formyl-3-methyl-5-[(sulfooxy)amino]-1,2,5,6-tetrahydropyridine-2-carboxamide, Beta-lactamase, CHLORIDE ION
著者van den Akker, F, Kumar, V.
登録日2018-10-08
公開日2019-02-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Targeting Multidrug-ResistantAcinetobacterspp.: Sulbactam and the Diazabicyclooctenone beta-Lactamase Inhibitor ETX2514 as a Novel Therapeutic Agent.
MBio, 10, 2019
4ELM
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BU of 4elm by Molmil
Crystal structure of the mouse CD1d-lysosulfatide-Hy19.3 TCR complex
分子名称: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Girardi, E, Maricic, I, Wang, J, Mac, T.T, Iyer, P, Kumar, V, Zajonc, D.M.
登録日2012-04-11
公開日2012-07-25
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.48 Å)
主引用文献Type II natural killer T cells use features of both innate-like and conventional T cells to recognize sulfatide self antigens.
Nat.Immunol., 13, 2012
4ELK
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BU of 4elk by Molmil
Crystal structure of the Hy19.3 type II NKT TCR
分子名称: ACETATE ION, FORMIC ACID, Hy19.3 TCR alpha chain (mouse variable domain, ...
著者Girardi, E, Maricic, I, Wang, J, Mac, T.T, Iyer, P, Kumar, V, Zajonc, D.M.
登録日2012-04-10
公開日2012-07-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Type II natural killer T cells use features of both innate-like and conventional T cells to recognize sulfatide self antigens.
Nat.Immunol., 13, 2012
7LC4
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BU of 7lc4 by Molmil
Crystal structure of Pseudomonas aeruginosa PBP3 in complex with gamma-lactam YU253911
分子名称: 1-[(2S)-2-{[(2Z)-2-(2-amino-5-chloro-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-3-oxopropyl]-4-{[2-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl]carbamoyl}-2,5-dihydro-1H-pyrazole-3-carboxylic acid, Peptidoglycan D,D-transpeptidase FtsI
著者van den Akker, F, Kumar, V.
登録日2021-01-09
公開日2021-04-28
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A gamma-lactam siderophore antibiotic effective against multidrug-resistant Pseudomonas aeruginosa, Klebsiella pneumoniae, and Acinetobacter spp.
Eur.J.Med.Chem., 220, 2021
3ES6
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BU of 3es6 by Molmil
Crystal structure of the novel complex formed between Zinc 2-glycoprotein (ZAG) and Prolactin inducible protein (PIP) from human seminal plasma
分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CARBONATE ION, HEXAETHYLENE GLYCOL, ...
著者Hassan, M.I, Bilgrami, S, Kumar, V, Singh, N, Yadav, S, Kaur, P, Singh, T.P.
登録日2008-10-04
公開日2008-10-28
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.23 Å)
主引用文献Crystal structure of the novel complex formed between zinc alpha2-glycoprotein (ZAG) and prolactin-inducible protein (PIP) from human seminal plasma
J.Mol.Biol., 384, 2008
7KIW
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BU of 7kiw by Molmil
Crystal structure of Pseudomonas aeruginosa PBP3 in complex with zidebactam
分子名称: (2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide, Peptidoglycan D,D-transpeptidase FtsI
著者van den Akker, F, Kumar, V.
登録日2020-10-25
公開日2021-01-13
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Structural Characterization of Diazabicyclooctane beta-Lactam "Enhancers" in Complex with Penicillin-Binding Proteins PBP2 and PBP3 of Pseudomonas aeruginosa.
Mbio, 12, 2021
1Z88
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BU of 1z88 by Molmil
Crystal structure of Lys154Arg mutant of mature AphA of S. typhimurium
分子名称: AphA protein, MAGNESIUM ION
著者Makde, R.D, Gupta, G.D, Kumar, V.
登録日2005-03-30
公開日2006-04-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
2A96
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BU of 2a96 by Molmil
Crystal structure of phosphate tethered PhoN of S. typhimurium
分子名称: PHOSPHATE ION, class A nonspecific acid phosphatase PhoN
著者Makde, R.D, Mahajan, S.K, Kumar, V.
登録日2005-07-11
公開日2006-05-23
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details.
Biochemistry, 46, 2007
1Z5U
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BU of 1z5u by Molmil
Crystal structure of S. typhimurium AphA complexed with cyclic-AMP
分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, AphA protein, MAGNESIUM ION
著者Makde, R.D, Kumar, V.
登録日2005-03-20
公開日2006-03-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and Function of class-B bacterial non-specific acid phosphatase: functional role of invariant Lys154
To be Published
1Z5G
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BU of 1z5g by Molmil
Crystal structure of Salmonella typhimurium AphA protein
分子名称: AphA protein, MAGNESIUM ION, PHOSPHATE ION
著者Makde, R.D, Kumar, V.
登録日2005-03-18
公開日2006-03-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
2AUT
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BU of 2aut by Molmil
Crystal structure of Lys154Asn mutant of mature AphA of S. typhimurium
分子名称: AphA, MAGNESIUM ION, PHOSPHATE ION, ...
著者Makde, R.D, Gupta, G.D, Kumar, V.
登録日2005-08-29
公開日2006-09-05
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein.
Arch.Biochem.Biophys., 464, 2007
2AKC
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BU of 2akc by Molmil
Crystal structure of tungstate complex of the PhoN protein from S. typhimurium
分子名称: TUNGSTATE(VI)ION, class A nonspecific acid phosphatase PhoN
著者Makde, R.D, Kumar, V.
登録日2005-08-03
公開日2006-05-23
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and Mutational Analysis of the PhoN Protein of Salmonella typhimurium Provide Insight into Mechanistic Details.
Biochemistry, 46, 2007
5XWH
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BU of 5xwh by Molmil
Structure of FrnE, a novel disulfide oxidoreductase from Deinococcus radiodurans crystallized in the presence of GSH
分子名称: FrnE protein
著者Bihani, S.C, Panicker, L, Kumar, V.
登録日2017-06-29
公開日2018-07-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of FrnE, a novel disulfide oxidoreductase from Deinococcus radiodurans crystallized in the presence of GSH
To Be Published
6CFC
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BU of 6cfc by Molmil
Crystal structure of soluble lytic transglycosylase Cj0843 of Campylobacter jejuni in complex with Bulgecin A
分子名称: 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, Lytic transglycosylase, SULFATE ION
著者van den Akker, F, Kumar, V.
登録日2018-02-14
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural studies and molecular dynamics simulations suggest a processive mechanism of exolytic lytic transglycosylase from Campylobacter jejuni.
PLoS ONE, 13, 2018
6CF8
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BU of 6cf8 by Molmil
Crystal structure of Cj0843 lytic transglycosylase of Campylobacter jejuni at 1.87A resolution
分子名称: Lytic transglycosylase, SULFATE ION
著者van den Akker, F, Kumar, V, Vijayaraghavan, J.
登録日2018-02-13
公開日2018-05-30
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural studies and molecular dynamics simulations suggest a processive mechanism of exolytic lytic transglycosylase from Campylobacter jejuni.
PLoS ONE, 13, 2018
5ZLU
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BU of 5zlu by Molmil
Ribosome Structure bound to ABC-F protein.
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Su, W.X, Kumar, V, Ero, R, Andrew, S.W.W, Jian, S, Yong-Gui, G.
登録日2018-03-29
公開日2018-08-01
最終更新日2019-12-04
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Ribosome protection by antibiotic resistance ATP-binding cassette protein.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5CNW
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BU of 5cnw by Molmil
Crystal structure of a novel disulfide oxidoreductase from Deinococcus radiodurans
分子名称: FrnE protein, GLYCEROL
著者Bihani, S.C, Panicker, L, Kumar, V.
登録日2015-07-18
公開日2016-07-20
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献drFrnE Represents a Hitherto Unknown Class of Eubacterial Cytoplasmic Disulfide Oxido-Reductases.
Antioxid. Redox Signal., 28, 2018
5CO3
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BU of 5co3 by Molmil
Crystal structure of a novel disulfide oxidoreductase from Deinococcus radiodurans crystallized in presence of DTT
分子名称: FrnE protein, GLYCEROL
著者Bihani, S.C, Panicker, L, Kumar, V.
登録日2015-07-19
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献drFrnE Represents a Hitherto Unknown Class of Eubacterial Cytoplasmic Disulfide Oxido-Reductases.
Antioxid. Redox Signal., 28, 2018
5CP1
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BU of 5cp1 by Molmil
Crystal structure of C239S mutant of a novel disulfide oxidoreductase from Deinococcus radiodurans
分子名称: 1,2-ETHANEDIOL, ACETATE ION, FrnE protein, ...
著者Bihani, S.C, Panicker, L, Kumar, V.
登録日2015-07-21
公開日2016-07-20
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Crystal structure of a novel disulfide oxidoreductase from Deinococcus radiodurans
To Be Published
5COH
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BU of 5coh by Molmil
Crystal structure of a novel disulfide oxidoreductase from Deinococcus radiodurans crystallized in presence of beta-mercaptoethanol
分子名称: FrnE protein
著者Bihani, S.C, Panicker, L, Kumar, V.
登録日2015-07-20
公開日2016-07-20
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献drFrnE Represents a Hitherto Unknown Class of Eubacterial Cytoplasmic Disulfide Oxido-Reductases.
Antioxid. Redox Signal., 28, 2018

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