Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2ZE8
DownloadVisualize
BU of 2ze8 by Molmil
Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with diphosphate
分子名称: Isopentenyl transferase, PYROPHOSPHATE 2-
著者Sakakibara, H.
登録日2007-12-06
公開日2008-02-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZE6
DownloadVisualize
BU of 2ze6 by Molmil
Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with substrate analog, DMASPP
分子名称: ADENOSINE MONOPHOSPHATE, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Isopentenyl transferase
著者Sakakibara, H.
登録日2007-12-06
公開日2008-02-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZE7
DownloadVisualize
BU of 2ze7 by Molmil
Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with zinc ion and substrate analog, DMASPP
分子名称: ADENOSINE MONOPHOSPHATE, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Isopentenyl transferase, ...
著者Sakakibara, H.
登録日2007-12-06
公開日2008-02-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis.
Proc.Natl.Acad.Sci.Usa, 105, 2008
5B4W
DownloadVisualize
BU of 5b4w by Molmil
Crystal structure of Plexin inhibitor complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, Synthesized cyclic peptide
著者Matsunaga, Y, Kitago, Y, Arimori, T, Takagi, J.
登録日2016-04-19
公開日2016-12-28
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Allosteric Inhibition of a Semaphorin 4D Receptor Plexin B1 by a High-Affinity Macrocyclic Peptide
Cell Chem Biol, 23, 2016
6LYC
DownloadVisualize
BU of 6lyc by Molmil
Crystal structure of the NOD SIRPa complex with D4-2
分子名称: ACETIC ACID, D4-2, SIRPa of the NOD mouse strain
著者Murata, Y, Matsuda, M, Nakagawa, A, Matozaki, T.
登録日2020-02-14
公開日2020-07-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Macrocyclic Peptide-Mediated Blockade of the CD47-SIRP alpha Interaction as a Potential Cancer Immunotherapy.
Cell Chem Biol, 27, 2020
8F4B
DownloadVisualize
BU of 8f4b by Molmil
Bovine multidrug resistance protein 1 (MRP1) bound to cyclic peptide inhibitor 1 (CPI1)
分子名称: Cyclic peptide inhibitor 1 (CPI1), Multidrug resistance-associated protein 1
著者Pietz, H.L, Chen, J.
登録日2022-11-10
公開日2023-03-22
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献A macrocyclic peptide inhibitor traps MRP1 in a catalytically incompetent conformation.
Proc.Natl.Acad.Sci.USA, 120, 2023
8F1F
DownloadVisualize
BU of 8f1f by Molmil
Structure of K48-linked tri-ubiquitin in complex with cyclic peptide
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Non-proteinogenic cyclic peptide (inhibitor), ...
著者Lubkowski, J, Fushman, D, Lemma, B.
登録日2022-11-05
公開日2023-11-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation.
Nat Commun, 14, 2023
6XS7
DownloadVisualize
BU of 6xs7 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D2
分子名称: 48V-DTY-THR-THR-ILE-TYR-TRP-THR-PRO-LEU-GLY-THR-PHE-PRO-ARG-ILE-ARG, FORMIC ACID, GLYCEROL, ...
著者Chen, K.-E, Guo, Q, Collins, B.M.
登録日2020-07-15
公開日2021-07-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XSA
DownloadVisualize
BU of 6xsa by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L2
分子名称: 48V-TYR-LEU-PRO-THR-ILE-THR-GLY-VAL-GLY-HIS-LEU-TRP-HIS-PRO-LEU, SULFATE ION, Vacuolar protein sorting-associated protein 29
著者Chen, K.-E, Guo, Q, Collins, B.M.
登録日2020-07-15
公開日2021-07-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS5
DownloadVisualize
BU of 6xs5 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1
分子名称: 48V-DTY-ILE-ILE-ASP-THR-PRO-LEU-GLY-VAL-PHE-LEU-SER-SER-LEU-LYS-ARG, FORMIC ACID, GLYCEROL, ...
著者Chen, K.-E, Guo, Q, Collins, B.M.
登録日2020-07-15
公開日2021-07-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS9
DownloadVisualize
BU of 6xs9 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L1
分子名称: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 48V-TYR-ILE-LYS-THR-PRO-LEU-GLY-THR-PHE-PRO-ASN-ARG-HIS-GLY, GLYCEROL, ...
著者Chen, K.-E, Guo, Q, Collins, B.M.
登録日2020-07-15
公開日2021-07-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS8
DownloadVisualize
BU of 6xs8 by Molmil
Crystal structure of Chaetomium thermophilum Vps29 complexed with RaPID-derived cyclic peptide RT-D3
分子名称: 48V-DTY-GLY-TYR-ASP-PRO-LEU-GLY-LEU-LYS-TYR-PHE-ALA, Vacuolar protein sorting-associated protein 29
著者Chen, K.-E, Guo, Q, Collins, B.M.
登録日2020-07-15
公開日2021-07-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.95009851 Å)
主引用文献De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
5KEZ
DownloadVisualize
BU of 5kez by Molmil
Selective and potent inhibition of the glycosidase human amylase by the short and extremely compact peptide piHA from mRNA display
分子名称: ACE-DTY-PRO-TYR-SER-CYS-TRP-VAL-ARG-HIS-NH2, CALCIUM ION, CHLORIDE ION, ...
著者Caner, S, Brayer, G.D.
登録日2016-06-10
公開日2017-03-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Rapid Discovery of Potent and Selective Glycosidase-Inhibiting De Novo Peptides.
Cell Chem Biol, 24, 2017
5VXB
DownloadVisualize
BU of 5vxb by Molmil
Crystal structure of Caulobacter crescentus ProXp-ala at 1.69 Angstrom
分子名称: ProXp-ala
著者Foster, M.P, Musier-Forsyth, K, Nakanishi, K, Ma, X.
登録日2017-05-23
公開日2017-08-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Conformational and chemical selection by a trans-acting editing domain.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5LY1
DownloadVisualize
BU of 5ly1 by Molmil
JMJD2A/ KDM4A COMPLEXED WITH NI(II) AND Macrocyclic PEPTIDE Inhibitor CP2 (13-mer)
分子名称: CHLORIDE ION, CP2, GLYCEROL, ...
著者King, O.N.F, Chowdhury, R, Kawamura, A, Schofield, C.J.
登録日2016-09-23
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Highly selective inhibition of histone demethylases by de novo macrocyclic peptides.
Nat Commun, 8, 2017
5LY2
DownloadVisualize
BU of 5ly2 by Molmil
JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Macrocyclic PEPTIDE Inhibitor CP2_R6Kme3 (13-mer)
分子名称: CHLORIDE ION, CP2_R6Kme3, GLYCEROL, ...
著者Chowdhury, R, Madden, S.K, Hopkinson, R, Schofield, C.J.
登録日2016-09-23
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Highly selective inhibition of histone demethylases by de novo macrocyclic peptides.
Nat Commun, 8, 2017
7TO9
DownloadVisualize
BU of 7to9 by Molmil
BRD3-BD1 in complex with RaPID linear peptide 2xAcK.4xE (diAcK.4xE)
分子名称: 2xAcK.4xE (diAcK.4xE), Bromodomain-containing protein 3, GLYCEROL
著者Mackay, J.P, Low, J.K.K, Patel, K.
登録日2022-01-23
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome.
J.Biol.Chem., 299, 2023
7TO8
DownloadVisualize
BU of 7to8 by Molmil
BRD3-BD1 in complex with RaPID linear peptide 2xAcK.1 (diAcK.1)
分子名称: 2xAcK.1 (diAcK.1), Bromodomain-containing protein 3, GLYCEROL
著者Patel, K, Low, J.K.K, Mackay, J.P.
登録日2022-01-23
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome.
J.Biol.Chem., 299, 2023
7TOA
DownloadVisualize
BU of 7toa by Molmil
BRD3-BD1 in complex with RaPID linear peptide 3xAcK.1 (triAcK.1)
分子名称: 3xAcK.1 (triAcK.1), Bromodomain-containing protein 3, GLYCEROL
著者Patel, K, Low, J.K.K, Mackay, J.P.
登録日2022-01-23
公開日2023-01-25
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome.
J.Biol.Chem., 299, 2023
7TO7
DownloadVisualize
BU of 7to7 by Molmil
BRD3-BD1 in complex with RaPID linear peptide 1xAcK.4XE (monoAcK.4xE)
分子名称: 1xAcK.4xE (monoAcK.4xE), Bromodomain-containing protein 3, GLYCEROL
著者Mackay, J.P, Low, J.K.K, Patel, K.
登録日2022-01-23
公開日2023-01-25
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome.
J.Biol.Chem., 299, 2023
8CV5
DownloadVisualize
BU of 8cv5 by Molmil
Peptide 4.2B in complex with BRD3.2
分子名称: ACETYL GROUP, AMINO GROUP, Bromodomain-containing protein 3, ...
著者Franck, C, Mackay, J.P.
登録日2022-05-18
公開日2023-05-24
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Discovery and characterization of cyclic peptides selective for the C-terminal bromodomains of BET family proteins.
Structure, 31, 2023
8CV7
DownloadVisualize
BU of 8cv7 by Molmil
Peptide 2.2E in complex with BRD2-BD2
分子名称: ACETYL GROUP, AMINO GROUP, Isoform 3 of Bromodomain-containing protein 2, ...
著者Franck, C, Mackay, J.P.
登録日2022-05-18
公開日2023-05-24
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Discovery and characterization of cyclic peptides selective for the C-terminal bromodomains of BET family proteins.
Structure, 31, 2023
8CV4
DownloadVisualize
BU of 8cv4 by Molmil
Peptide 4.2C in complex with BRD4.2
分子名称: ACETYL GROUP, AMINO GROUP, BRD4 protein, ...
著者Franck, C, Mackay, J.P.
登録日2022-05-18
公開日2023-05-24
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Discovery and characterization of cyclic peptides selective for the C-terminal bromodomains of BET family proteins.
Structure, 31, 2023
8CV6
DownloadVisualize
BU of 8cv6 by Molmil
Peptide 4.2B in complex with BRD4.2
分子名称: ACETYL GROUP, AMINO GROUP, BRD4 protein, ...
著者Franck, C, Mackay, J.P.
登録日2022-05-18
公開日2023-05-24
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Discovery and characterization of cyclic peptides selective for the C-terminal bromodomains of BET family proteins.
Structure, 31, 2023
8E7O
DownloadVisualize
BU of 8e7o by Molmil
CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN
分子名称: SULFATE ION, Ubiquitin
著者Lemma, B.E, Fushman, D.
登録日2022-08-24
公開日2022-11-02
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation.
Nat Commun, 14, 2023

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon