Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3B5Z
DownloadVisualize
BU of 3b5z by Molmil
Crystal Structure of MsbA from Salmonella typhimurium with ADP Vanadate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lipid A export ATP-binding/permease protein msbA, VANADATE ION
Authors:Ward, A, Reyes, C.L, Yu, J, Roth, C.B, Chang, G.
Deposit date:2007-10-26
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Flexibility in the ABC transporter MsbA: Alternating access with a twist.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3FE4
DownloadVisualize
BU of 3fe4 by Molmil
Crystal Structure of Human Carbonic Anhydrase vi
Descriptor: Carbonic anhydrase 6, GLYCEROL, MAGNESIUM ION
Authors:Pilka, E.S, Kochan, G, Krysztofinska, E, Muniz, J, Yue, W.W, Roos, A.K, von Delft, F, Arrowsmith, C.H, Weigelt, J, Edwards, A, Bountra, C, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2008-11-27
Release date:2008-12-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the secretory isozyme of mammalian carbonic anhydrases CA VI: implications for biological assembly and inhibitor development
Biochem.Biophys.Res.Commun., 419, 2012
3B5W
DownloadVisualize
BU of 3b5w by Molmil
Crystal Structure of Eschericia coli MsbA
Descriptor: Lipid A export ATP-binding/permease protein msbA
Authors:Ward, A, Reyes, C.L, Yu, J, Roth, C.B, Chang, G.
Deposit date:2007-10-26
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (5.3 Å)
Cite:Flexibility in the ABC transporter MsbA: Alternating access with a twist.
Proc.Natl.Acad.Sci.Usa, 104, 2007
7AKZ
DownloadVisualize
BU of 7akz by Molmil
Deciphering the role of the channel constrictions in the opening mechanism of MexAB-OprM efflux pump from Pseudomonas aeruginosa
Descriptor: Outer membrane protein OprM, PALMITIC ACID, octyl beta-D-glucopyranoside
Authors:Ntsogo Enguene, V.Y, Monlezun, L, Ma, M, Garnier, C, Lascombe, M.B, Salem, M, Guenard, S, Plesiat, P, Llanes, C, Phan, G, Broutin, I.
Deposit date:2020-10-02
Release date:2022-04-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Deciphering the role of the channel constrictions in the opening mechanism of MexAB-OprM efflux pump from Pseudomonas aeruginosa
To Be Published
2XCI
DownloadVisualize
BU of 2xci by Molmil
Membrane-embedded monofunctional glycosyltransferase WaaA of Aquifex aeolicus, substrate-free form
Descriptor: 3-DEOXY-D-MANNO-2-OCTULOSONIC ACID TRANSFERASE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Schmidt, H, Hansen, G, Hilgenfeld, R, Mamat, U, Mesters, J.R.
Deposit date:2010-04-26
Release date:2011-05-11
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Mechanistic Analysis of the Membrane-Embedded Glycosyltransferase Waaa Required for Lipopolysaccharide Synthesis.
Proc.Natl.Acad.Sci.USA, 109, 2012
3B60
DownloadVisualize
BU of 3b60 by Molmil
Crystal Structure of MsbA from Salmonella typhimurium with AMPPNP, higher resolution form
Descriptor: Lipid A export ATP-binding/permease protein msbA, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Ward, A, Reyes, C.L, Yu, J, Roth, C.B, Chang, G.
Deposit date:2007-10-26
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Flexibility in the ABC transporter MsbA: Alternating access with a twist.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3B5Y
DownloadVisualize
BU of 3b5y by Molmil
Crystal Structure of MsbA from Salmonella typhimurium with AMPPNP
Descriptor: Lipid A export ATP-binding/permease protein msbA, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Ward, A, Reyes, C.L, Yu, J, Roth, C.B, Chang, G.
Deposit date:2007-10-26
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Flexibility in the ABC transporter MsbA: Alternating access with a twist.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2WCT
DownloadVisualize
BU of 2wct by Molmil
human SARS coronavirus unique domain (triclinic form)
Descriptor: NON-STRUCTURAL PROTEIN 3
Authors:Tan, J, Vonrhein, C, Smart, O.S, Bricogne, G, Bollati, M, Hansen, G, Mesters, J.R, Hilgenfeld, R.
Deposit date:2009-03-16
Release date:2009-05-26
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:The Sars-Unique Domain (Sud) of Sars Coronavirus Contains Two Macrodomains that Bind G-Quadruplexes.
Plos Pathog., 5, 2009
5X8I
DownloadVisualize
BU of 5x8i by Molmil
Crystal structure of human CLK1 in complex with compound 25
Descriptor: 5-[1-[(1S)-1-(4-fluorophenyl)ethyl]-[1,2,3]triazolo[4,5-c]quinolin-8-yl]-1,3-benzoxazole, Dual specificity protein kinase CLK1
Authors:Sun, Q.Z, Lin, G.F, Li, L.L, Jin, X.T, Huang, L.Y, Zhang, G, Wei, Y.Q, Lu, G.W, Yang, S.Y.
Deposit date:2017-03-02
Release date:2017-08-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Discovery of Potent and Selective Inhibitors of Cdc2-Like Kinase 1 (CLK1) as a New Class of Autophagy Inducers
J. Med. Chem., 60, 2017
1JH5
DownloadVisualize
BU of 1jh5 by Molmil
Crystal Structure of sTALL-1 of TNF family ligand
Descriptor: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B
Authors:Liu, Y, Xu, L, Opalka, N, Shu, H.-B, Zhang, G.
Deposit date:2001-06-27
Release date:2002-02-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of sTALL-1 reveals a virus-like assembly of TNF family ligands.
Cell(Cambridge,Mass.), 108, 2002
2LQV
DownloadVisualize
BU of 2lqv by Molmil
YebF
Descriptor: Protein yebF
Authors:Prehna, G, Zhang, G, Gong, X, Duszyk, M, Okon, M, Mcintosh, L.P, Weiner, J.H, Strynadka, N.C.J.
Deposit date:2012-03-16
Release date:2012-06-13
Last modified:2024-11-27
Method:SOLUTION NMR
Cite:A Protein Export Pathway Involving Escherichia coli Porins.
Structure, 20, 2012
5DUJ
DownloadVisualize
BU of 5duj by Molmil
Crystal structure of ldtMt2 in complex with Faropenem adduct
Descriptor: (2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acid, BETA-MERCAPTOETHANOL, L,D-transpeptidase 2, ...
Authors:Kumar, P, Lamichhane, G.
Deposit date:2015-09-18
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
5DU7
DownloadVisualize
BU of 5du7 by Molmil
Crystal structure of ldtMt2 at 1.79 Angstrom resolution
Descriptor: L,D-transpeptidase 2
Authors:Kumar, P, Lamichhane, G.
Deposit date:2015-09-18
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
5E1I
DownloadVisualize
BU of 5e1i by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T210
Descriptor: (2S,3R,4R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-(methylsulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, GLYCEROL, L,D-transpeptidase 2, ...
Authors:Kumar, P, Ginell, S.L, Lamichhane, G.
Deposit date:2015-09-29
Release date:2016-10-12
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
5E51
DownloadVisualize
BU of 5e51 by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 1 with Faropenem adduct
Descriptor: (3R)-3-hydroxybutanal, L,D-transpeptidase 1
Authors:Kumar, P, Lamichhane, G, Ginell, S.L.
Deposit date:2015-10-07
Release date:2016-10-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
5DVP
DownloadVisualize
BU of 5dvp by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with Doripenem adduct
Descriptor: (2S,3R,4S)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, L,D-transpeptidase 2, PHOSPHONOACETALDEHYDE, ...
Authors:Kumar, P, Lamichhane, G.
Deposit date:2015-09-21
Release date:2016-09-28
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
5DZP
DownloadVisualize
BU of 5dzp by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T206 in conformation B
Descriptor: (2~{R},3~{R},4~{R})-4-methyl-3-(2-oxidanylidene-2-propoxy-ethyl)sulfanyl-5-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-2-carboxylic acid, L,D-transpeptidase 2
Authors:Kumar, P, Ginell, S.L, Lamichhane, G.
Deposit date:2015-09-25
Release date:2016-10-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
5E5L
DownloadVisualize
BU of 5e5l by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 1 at 1.89 Angstrom
Descriptor: L,D-transpeptidase 1
Authors:Kumar, P, Lamichhane, G, Ginell, S.L.
Deposit date:2015-10-08
Release date:2016-10-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
1LVH
DownloadVisualize
BU of 1lvh by Molmil
The Structure of Phosphorylated beta-phosphoglucomutase from Lactoccocus lactis to 2.3 angstrom resolution
Descriptor: MAGNESIUM ION, beta-phosphoglucomutase
Authors:Lahiri, S.D, Zhang, G, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2002-05-28
Release date:2002-08-14
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Caught in the act: the structure of phosphorylated beta-phosphoglucomutase from Lactococcus lactis.
Biochemistry, 41, 2002
2YCQ
DownloadVisualize
BU of 2ycq by Molmil
Crystal structure of checkpoint kinase 2 in complex with inhibitor PV1115
Descriptor: N-{4-[(1E)-N-1H-IMIDAZOL-2-YLETHANEHYDRAZONOYL]PHENYL}-7-NITRO-1H-INDOLE-2-CARBOXAMIDE, NITRATE ION, SERINE/THREONINE-PROTEIN KINASE CHK2
Authors:Lountos, G.T, Jobson, A.G, Tropea, J.E, Self, C.R, Pommier, Y, Shoemaker, R.H, Zhang, G, Waugh, D.S.
Deposit date:2011-03-16
Release date:2011-11-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Characterization of Inhibitor Complexes with Checkpoint Kinase 2 (Chk2), a Drug Target for Cancer Therapy.
J.Struct.Biol., 176, 2011
8YJG
DownloadVisualize
BU of 8yjg by Molmil
Crystal structure of the nucleotide-binding domain of Candida glabrata Hsp90
Descriptor: ATP-dependent molecular chaperone HSC82
Authors:Tan, L, Li, X, Zhang, G, Chen, L, Im, Y.J.
Deposit date:2024-03-01
Release date:2025-03-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the nucleotide-binding domain of Candida glabrata Hsp90
To Be Published
4ZFQ
DownloadVisualize
BU of 4zfq by Molmil
Structure of M. tuberculosis (3,3) L,D-Transpeptidase, LdtMt5. (Meropenen-adduct form)
Descriptor: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, DI(HYDROXYETHYL)ETHER, L,D-transpeptidase 5
Authors:Basta, L, Ghosh, A, Lamichhane, G, Bianchet, M.A.
Deposit date:2015-04-21
Release date:2015-09-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:Loss of a Functionally and Structurally Distinct ld-Transpeptidase, LdtMt5, Compromises Cell Wall Integrity in Mycobacterium tuberculosis.
J.Biol.Chem., 290, 2015
2YCF
DownloadVisualize
BU of 2ycf by Molmil
Crystal Structure of Checkpoint Kinase 2 in complex with Inhibitor PV1531
Descriptor: (2E)-N-hydroxy-2-[1-(4-{[(4-{(1E)-1-[2-(N'-hydroxycarbamimidoyl)hydrazinylidene]ethyl}phenyl)carbamoyl]amino}phenyl)ethylidene]hydrazinecarboximidamide, MAGNESIUM ION, NITRATE ION, ...
Authors:Lountos, G.T, Jobson, A.G, Tropea, J.E, Self, C.R, Pommier, Y, Shoemaker, R.H, Zhang, G, Waugh, D.S.
Deposit date:2011-03-14
Release date:2011-11-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Characterization of Inhibitor Complexes with Checkpoint Kinase 2 (Chk2), a Drug Target for Cancer Therapy.
J.Struct.Biol., 176, 2011
8JLV
DownloadVisualize
BU of 8jlv by Molmil
Beneficial flip of substrate orientation enable determine substrate specificity for zearalenone lactone hydrolase
Descriptor: AB hydrolase-1 domain-containing protein
Authors:Xiang, L, Wang, M, Zhang, G, Zhou, J.
Deposit date:2023-06-02
Release date:2023-12-06
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.998636 Å)
Cite:Enhancing the activity of zearalenone lactone hydrolase toward the more toxic alpha-zearalanol via a single-point mutation.
Appl.Environ.Microbiol., 90, 2024
2YCS
DownloadVisualize
BU of 2ycs by Molmil
Crystal structure of checkpoint kinase 2 in complex with PV788
Descriptor: N-{4-[(1E)-N-CARBAMIMIDOYLETHANEHYDRAZONOYL]PHENYL}-1H-INDOLE-3-CARBOXAMIDE, NITRATE ION, SERINE/THREONINE-PROTEIN KINASE CHK2
Authors:Lountos, G.T, Jobson, A.G, Tropea, J.E, Self, C.R, Pommier, Y, Shoemaker, R.H, Zhang, G, Waugh, D.S.
Deposit date:2011-03-16
Release date:2011-11-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Characterization of Inhibitor Complexes with Checkpoint Kinase 2 (Chk2), a Drug Target for Cancer Therapy.
J.Struct.Biol., 176, 2011

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon