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4PVG
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BU of 4pvg by Molmil
Crystal structure of protein tyrosine phosphatase Shp2 catalytic domain complex with small molecular compound L88N79
Descriptor: 2-[3-({4-[(1,3-benzodioxol-5-ylmethyl)amino]-4-oxobutanoyl}amino)phenyl]-6-hydroxy-3-iodo-1-methyl-1H-indole-5-carboxylic acid, Tyrosine-protein phosphatase non-receptor type 11
Authors:Zhang, Z.-Y, Zeng, L, Liu, D, Yu, Z.
Deposit date:2014-03-17
Release date:2015-04-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of protein tyrosine Shp2 catalytic domain complex with compound L88N79
To be Published
4RBN
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BU of 4rbn by Molmil
The crystal structure of Nitrosomonas europaea sucrose synthase: Insights into the evolutionary origin of sucrose metabolism in prokaryotes
Descriptor: Sucrose synthase:Glycosyl transferases group 1
Authors:Wu, R, Asencion Diez, M.D, Figueroa, C.M, Machtey, M, Iglesias, A.A, Ballicora, M.A, Liu, D.
Deposit date:2014-09-12
Release date:2015-07-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:The Crystal Structure of Nitrosomonas europaea Sucrose Synthase Reveals Critical Conformational Changes and Insights into Sucrose Metabolism in Prokaryotes.
J.Bacteriol., 197, 2015
7ULU
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BU of 7ulu by Molmil
Human DDAH1 soaked with its inhibitor ClPyrAA
Descriptor: (2S)-2-amino-4-[(pyridin-2-yl)amino]butanoic acid, N(G),N(G)-dimethylarginine dimethylaminohydrolase 1
Authors:Butrin, A, Zheng, Y, Tuley, A, Liu, D, Fast, W.
Deposit date:2022-04-05
Release date:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Optimization of a switchable electrophile fragment into a potent and selective covalent inhibitor of human DDAH1
To Be Published
7ULX
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BU of 7ulx by Molmil
Human DDAH1 soaked with its inhibitor N4-(4-chloropyridin-2-yl)-L-asparagine
Descriptor: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1, N-(pyridin-2-yl)-L-asparagine
Authors:Zheng, Y, Butrin, A, Tuley, A, Liu, D, Fast, W.
Deposit date:2022-04-05
Release date:2023-08-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Optimization of a switchable electrophile fragment into a potent and selective covalent inhibitor of human DDAH1
To Be Published
7ULV
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BU of 7ulv by Molmil
Human DDAH1 soaked with its inactivator S-((4-chloropyridin-2-yl)methyl)-L-cysteine
Descriptor: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1, S-[(pyridin-2-yl)methyl]-L-cysteine
Authors:Zheng, Y, Butrin, A, Tuley, A, Liu, D, Fast, W.
Deposit date:2022-04-05
Release date:2023-08-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Optimization of a switchable electrophile fragment into a potent and selective covalent inhibitor of human DDAH1
To Be Published
5XYX
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BU of 5xyx by Molmil
The structure of p38 alpha in complex with a triazol inhibitor
Descriptor: Mitogen-activated protein kinase 14, N-(2-chloro-6-fluorobenzyl)-5-(furan-2-yl)-2H-1,2,4-triazol-3-amine
Authors:Wang, Y.L, Sun, Y.Z, Cao, R, Liu, D, Li, L, Qi, X.B, Huang, N.
Deposit date:2017-07-11
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:In Silico Identification of a Novel Hinge-Binding Scaffold for Kinase Inhibitor Discovery.
J. Med. Chem., 60, 2017
5XYY
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BU of 5xyy by Molmil
The structure of p38 alpha in complex with a triazol inhibitor
Descriptor: 3-(5-{[(2-chloro-6-fluorophenyl)methyl]amino}-4H-1,2,4-triazol-3-yl)phenol, Mitogen-activated protein kinase 14
Authors:Wang, Y.L, Sun, Y.Z, Cao, R, Liu, D, Li, L, Qi, X.B, Huang, N.
Deposit date:2017-07-11
Release date:2018-01-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:In Silico Identification of a Novel Hinge-Binding Scaffold for Kinase Inhibitor Discovery.
J. Med. Chem., 60, 2017
5XYZ
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BU of 5xyz by Molmil
The structure of human BTK kinase domain in complex with a covalent inhibitor
Descriptor: N-[3-(5-{[(2-chloro-6-fluorophenyl)methyl]amino}-1H-1,2,4-triazol-3-yl)phenyl]propanamide, Tyrosine-protein kinase BTK
Authors:Wang, Y.L, Sun, Y.Z, Cao, R, Liu, D, Xie, Y.T, Li, L, Qi, X.B, Huang, N.
Deposit date:2017-07-11
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:In Silico Identification of a Novel Hinge-Binding Scaffold for Kinase Inhibitor Discovery.
J. Med. Chem., 60, 2017
7WJU
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BU of 7wju by Molmil
Cryo-EM structure of the AsCas12f1-sgRNAv1-dsDNA ternary complex
Descriptor: Non-target strand, OrfB_Zn_ribbon domain-containing protein, Target strand, ...
Authors:Wu, Z, Liu, D, Shen, H, Ji, Q.
Deposit date:2022-01-07
Release date:2023-01-18
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structure-directed functional evolution of the miniature CRISPR-AsCas12f1 system
To Be Published
6B6G
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BU of 6b6g by Molmil
Crystal Structure of GABA Aminotransferase bound to (S)-3-Amino-4-(difluoromethylenyl)cyclopent-1-ene-1-carboxylic acid, an Potent Inactivatorfor the Treatment of Addiction
Descriptor: (3R,4E)-4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]cyclopent-1-ene-1,3-dicarboxylic acid, 4-aminobutyrate aminotransferase, mitochondrial, ...
Authors:Mascarenhas, R, Juncosa, J.I, Takaya, K, Le, L.V, Moschitto, M.J, Silverman, R.B, Liu, D.
Deposit date:2017-10-02
Release date:2018-02-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Design and Mechanism of (S)-3-Amino-4-(difluoromethylenyl)cyclopent-1-ene-1-carboxylic Acid, a Highly Potent gamma-Aminobutyric Acid Aminotransferase Inactivator for the Treatment of Addiction.
J. Am. Chem. Soc., 140, 2018
6J8I
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BU of 6j8i by Molmil
Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, ProTx-II and tetrodotoxin (Y1755 up)
Descriptor: (1R,5R,6R,7R,9S,11S,12S,13S,14S)-3-amino-14-(hydroxymethyl)-8,10-dioxa-2,4-diazatetracyclo[7.3.1.1~7,11~.0~1,6~]tetradec-3-ene-5,9,12,13,14-pentol (non-preferred name), 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shen, H, Liu, D, Lei, J, Yan, N.
Deposit date:2019-01-19
Release date:2019-02-27
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins.
Science, 363, 2019
6J8G
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BU of 6j8g by Molmil
Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (Y1755 up)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein type 9 subunit alpha, ...
Authors:Shen, H, Liu, D, Lei, J, Yan, N.
Deposit date:2019-01-19
Release date:2019-02-27
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins.
Science, 363, 2019
6J8H
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BU of 6j8h by Molmil
Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (Y1755 down)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein type 9 subunit alpha, ...
Authors:Shen, H, Liu, D, Lei, J, Yan, N.
Deposit date:2019-01-19
Release date:2019-02-27
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins.
Science, 363, 2019
6J8J
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BU of 6j8j by Molmil
Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, ProTx-II and tetrodotoxin (Y1755 down)
Descriptor: (1R,5R,6R,7R,9S,11S,12S,13S,14S)-3-amino-14-(hydroxymethyl)-8,10-dioxa-2,4-diazatetracyclo[7.3.1.1~7,11~.0~1,6~]tetradec-3-ene-5,9,12,13,14-pentol (non-preferred name), 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shen, H, Liu, D, Lei, J, Yan, N.
Deposit date:2019-01-19
Release date:2019-02-27
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins.
Science, 363, 2019
7W9M
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BU of 7w9m by Molmil
Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, ProTx-II and tetrodotoxin (S6IV pi helix conformer)
Descriptor: (1R,5R,6R,7R,9S,11S,12S,13S,14S)-3-amino-14-(hydroxymethyl)-8,10-dioxa-2,4-diazatetracyclo[7.3.1.1~7,11~.0~1,6~]tetradec-3-ene-5,9,12,13,14-pentol (non-preferred name), 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Yan, N, Huang, G, Liu, D, Wei, P, Shen, H.
Deposit date:2021-12-10
Release date:2022-05-25
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:High-resolution structures of human Na v 1.7 reveal gating modulation through alpha-pi helical transition of S6 IV.
Cell Rep, 39, 2022
7W9P
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BU of 7w9p by Molmil
Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (S6IV pi helix conformer)
Descriptor: (2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Yan, N, Huang, G, Liu, D, Wei, P, Shen, H.
Deposit date:2021-12-10
Release date:2022-05-25
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:High-resolution structures of human Na v 1.7 reveal gating modulation through alpha-pi helical transition of S6 IV.
Cell Rep, 39, 2022
7W9T
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BU of 7w9t by Molmil
Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (S6IV alpha helix conformer)
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Yan, N, Huang, G, Liu, D, Wei, P.
Deposit date:2021-12-10
Release date:2022-05-25
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3 Å)
Cite:High-resolution structures of human Na v 1.7 reveal gating modulation through alpha-pi helical transition of S6 IV.
Cell Rep, 39, 2022
7W9L
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BU of 7w9l by Molmil
Cryo-EM structure of human Nav1.7(E406K)-beta1-beta2 complex
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Yan, N, Huang, G, Liu, D, Wei, P, Shen, H.
Deposit date:2021-12-10
Release date:2022-06-01
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:High-resolution structures of human Na v 1.7 reveal gating modulation through alpha-pi helical transition of S6 IV.
Cell Rep, 39, 2022
7W9K
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BU of 7w9k by Molmil
Cryo-EM structure of human Nav1.7-beta1-beta2 complex at 2.2 angstrom resolution
Descriptor: (2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Yan, N, Huang, G, Liu, D, Wei, P, Shen, H.
Deposit date:2021-12-09
Release date:2022-06-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:High-resolution structures of human Na v 1.7 reveal gating modulation through alpha-pi helical transition of S6 IV.
Cell Rep, 39, 2022
7EZO
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BU of 7ezo by Molmil
GH10 domain of bifunctional endoxylanase and arabinofuranosidase of Bi0569
Descriptor: endoxylanase/arabinofuranosidase
Authors:Wang, C.Y, Liu, D.
Deposit date:2021-06-01
Release date:2022-07-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.80005527 Å)
Cite:GH10 domain of bifunctional endoxylanase and arabinofuranosidase of Bi0569
To Be Published
6O20
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BU of 6o20 by Molmil
Cryo-EM structure of TRPV5 with calmodulin bound
Descriptor: CALCIUM ION, Calmodulin, Transient receptor potential cation channel subfamily V member 5
Authors:Dang, S, van Goor, M.K, Asarnow, D, Wang, Y, Julius, D, Cheng, Y, van der Wijst, J.
Deposit date:2019-02-22
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insight into TRPV5 channel function and modulation.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O1N
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BU of 6o1n by Molmil
Cryo-EM structure of TRPV5 (1-660) in nanodisc
Descriptor: Transient receptor potential cation channel subfamily V member 5
Authors:Dang, S, van Goor, M.K, Asarnow, D, Wang, Y, Julius, D, Cheng, Y, van der Wijst, J.
Deposit date:2019-02-21
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insight into TRPV5 channel function and modulation.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O1P
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BU of 6o1p by Molmil
Cryo-EM structure of full length TRPV5 in nanodisc
Descriptor: Transient receptor potential cation channel subfamily V member 5
Authors:Dang, S, van Goor, M.K, Asarnow, D, Wang, Y, Julius, D, Cheng, Y, van der Wijst, J.
Deposit date:2019-02-21
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insight into TRPV5 channel function and modulation.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O1U
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BU of 6o1u by Molmil
Cryo-EM structure of TRPV5 W583A in nanodisc
Descriptor: Transient receptor potential cation channel subfamily V member 5
Authors:Dang, S, van Goor, M.K, Asarnow, D, Wang, Y, Julius, D, Cheng, Y, van der Wijst, J.
Deposit date:2019-02-21
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural insight into TRPV5 channel function and modulation.
Proc.Natl.Acad.Sci.USA, 116, 2019
6V9Y
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BU of 6v9y by Molmil
Structure of TRPA1 bound with A-967079, PMAL-C8
Descriptor: Transient receptor potential cation channel subfamily A member 1
Authors:Zhao, J, Lin King, J.V, Paulsen, C.E, Cheng, Y, Julius, D.
Deposit date:2019-12-16
Release date:2020-05-06
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Irritant-evoked activation and calcium modulation of the TRPA1 receptor.
Nature, 585, 2020

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