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6URO
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BU of 6uro by Molmil
Cryo-EM structure of human CPSF160-WDR33-CPSF30-PAS RNA-CstF77 complex
Descriptor: Cleavage and polyadenylation specificity factor subunit 1, Cleavage and polyadenylation specificity factor subunit 4, Cleavage stimulation factor subunit 3, ...
Authors:Sun, Y, Zhang, Y, Walz, T, Tong, L.
Deposit date:2019-10-23
Release date:2019-11-27
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Insights into the Human Pre-mRNA 3'-End Processing Machinery.
Mol.Cell, 77, 2020
4RWW
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BU of 4rww by Molmil
Crystal Structure of L. monocytogenes PstA in complex with cyclic-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Lmo2692 protein
Authors:Choi, P.H, Tong, L.
Deposit date:2014-12-07
Release date:2014-12-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular basis for the recognition of cyclic-di-AMP by PstA, a PII -like signal transduction protein.
Microbiologyopen, 4, 2015
6V4X
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BU of 6v4x by Molmil
Cryo-EM structure of an active human histone pre-mRNA 3'-end processing machinery at 3.2 Angstrom resolution
Descriptor: Cleavage and polyadenylation specificity factor subunit 2, Cleavage and polyadenylation specificity factor subunit 3, Small nuclear ribonucleoprotein E, ...
Authors:Sun, Y, Zhang, Y, Walz, T, Tong, L.
Deposit date:2019-12-02
Release date:2020-02-19
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of an active human histone pre-mRNA 3'-end processing machinery.
Science, 367, 2020
4RWX
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BU of 4rwx by Molmil
Crystal Structure of L. monocytogenes PstA
Descriptor: Lmo2692 protein
Authors:Choi, P.H, Tong, L.
Deposit date:2014-12-07
Release date:2014-12-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular basis for the recognition of cyclic-di-AMP by PstA, a PII -like signal transduction protein.
Microbiologyopen, 4, 2015
4S1B
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BU of 4s1b by Molmil
Crystal Structure of L. monocytogenes phosphodiesterase PgpH HD domain in complex with Cyclic-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, FE (III) ION, Lmo1466 protein
Authors:Luo, S, Tong, L.
Deposit date:2015-01-12
Release date:2015-02-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:An HD-domain phosphodiesterase mediates cooperative hydrolysis of c-di-AMP to affect bacterial growth and virulence.
Proc.Natl.Acad.Sci.USA, 112, 2015
6O0H
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BU of 6o0h by Molmil
Cryo-EM structure of human ATP-citrate lyase in complex with inhibitor NDI-091143
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-citrate synthase, methyl 3-chloro-5-[(4,6-difluoro[1,1'-biphenyl]-3-yl)sulfamoyl]-4-hydroxybenzoate
Authors:Wei, J, Tong, L.
Deposit date:2019-02-16
Release date:2019-04-17
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:An allosteric mechanism for potent inhibition of human ATP-citrate lyase.
Nature, 568, 2019
6O3W
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BU of 6o3w by Molmil
Crystal structure of yeast Nrd1 CID in complex with Sen1 NIM1
Descriptor: Helicase SEN1, Protein NRD1
Authors:Zhang, Y, Tong, L.
Deposit date:2019-02-27
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification of Three Sequence Motifs in the Transcription Termination Factor Sen1 that Mediate Direct Interactions with Nrd1.
Structure, 27, 2019
6O3Y
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BU of 6o3y by Molmil
Crystal structure of yeast Nrd1 CID in complex with Sen1 NIM3
Descriptor: CHLORIDE ION, Helicase SEN1, Protein NRD1
Authors:Zhang, Y, Tong, L.
Deposit date:2019-02-27
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:Identification of Three Sequence Motifs in the Transcription Termination Factor Sen1 that Mediate Direct Interactions with Nrd1.
Structure, 27, 2019
6WUK
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BU of 6wuk by Molmil
Crystal structure of mouse DXO in complex with CoA
Descriptor: COENZYME A, Decapping and exoribonuclease protein
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
6X7V
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BU of 6x7v by Molmil
Crystal Structure of the Human Nudix Hydrolase Nudt16
Descriptor: CHLORIDE ION, MANGANESE (II) ION, U8 snoRNA-decapping enzyme
Authors:Hamilton, K, Tong, L.
Deposit date:2020-05-30
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mammalian Nudix proteins cleave nucleotide metabolite caps on RNAs.
Nucleic Acids Res., 48, 2020
6WUG
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BU of 6wug by Molmil
Crystal Structure of S. pombe Rai1 in complex with 3'-FADP
Descriptor: 1,2-ETHANEDIOL, Decapping nuclease din1, MAGNESIUM ION, ...
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
6XGT
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BU of 6xgt by Molmil
Crystal structure of cyanase from the thermophilic fungus Thermomyces lanuginosus
Descriptor: Cyanate hydratase, FORMIC ACID, MALONATE ION
Authors:Choi, P.H, Ranjan, B, Tong, L.
Deposit date:2020-06-18
Release date:2021-01-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a thermophilic fungal cyanase and its implications on the catalytic mechanism for bioremediation.
Sci Rep, 11, 2021
6X7U
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BU of 6x7u by Molmil
Crystal Structure of the Human Nudix Hydrolase Nudt16 in complex with FAD
Descriptor: ADENOSINE MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, MANGANESE (II) ION, ...
Authors:Hamilton, K, Tong, L.
Deposit date:2020-05-30
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mammalian Nudix proteins cleave nucleotide metabolite caps on RNAs.
Nucleic Acids Res., 48, 2020
6WUI
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BU of 6wui by Molmil
Crystal Structure of mutant S. pombe Rai1 (E150S/E199Q/E239Q) in complex with 3'-FADP
Descriptor: Decapping nuclease din1, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
6XNV
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BU of 6xnv by Molmil
CRYSTAL STRUCTURE OF LISTERIA MONOCYTOGENES CBPB PROTEIN (LMO1009) IN COMPLEX WITH C-DI-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, CBS domain-containing protein
Authors:Luo, S, Tong, L.
Deposit date:2020-07-04
Release date:2020-09-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:(p)ppGpp and c-di-AMP Homeostasis Is Controlled by CbpB in Listeria monocytogenes.
Mbio, 11, 2020
6XNU
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BU of 6xnu by Molmil
CRYSTAL STRUCTURE OF CBPB PROTEIN (LMO1009) FROM LISTERIA MONOCYTOGENES
Descriptor: CBS domain-containing protein, CHLORIDE ION
Authors:Luo, S, Tong, L.
Deposit date:2020-07-04
Release date:2020-09-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:(p)ppGpp and c-di-AMP Homeostasis Is Controlled by CbpB in Listeria monocytogenes.
Mbio, 11, 2020
5BTE
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BU of 5bte by Molmil
Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+
Descriptor: AFR263Cp, MANGANESE (II) ION, RNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3'), ...
Authors:Wang, V.Y, Tong, L.
Deposit date:2015-06-03
Release date:2015-07-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes.
Nucleic Acids Res., 43, 2015
5BTH
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BU of 5bth by Molmil
Crystal structure of Candida albicans Rai1
Descriptor: Decapping nuclease RAI1
Authors:Wang, V.Y, Tong, L.
Deposit date:2015-06-03
Release date:2015-07-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes.
Nucleic Acids Res., 43, 2015
5BUD
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BU of 5bud by Molmil
Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+
Descriptor: Decapping nuclease RAI1, MANGANESE (II) ION, RNA (5'-R(P*UP*UP*UP*U)-3')
Authors:Wang, V.Y, Tong, L.
Deposit date:2015-06-03
Release date:2015-07-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes.
Nucleic Acids Res., 43, 2015
5BTO
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BU of 5bto by Molmil
Crystal structure of Scheffersomyces stipitis Rai1
Descriptor: SsRai1
Authors:Wang, V.Y, Tong, L.
Deposit date:2015-06-03
Release date:2015-07-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.641 Å)
Cite:Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes.
Nucleic Acids Res., 43, 2015
5BTB
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BU of 5btb by Molmil
Crystal Structure of Ashbya gossypii Rai1
Descriptor: AFR263Cp, SULFATE ION
Authors:Wang, V.Y, Tong, L.
Deposit date:2015-06-02
Release date:2015-07-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes.
Nucleic Acids Res., 43, 2015
8UIB
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BU of 8uib by Molmil
Structure of the human INTS9-INTS11-BRAT1 complex
Descriptor: BRCA1-associated ATM activator 1, Integrator complex subunit 11, Integrator complex subunit 9, ...
Authors:Lin, M, Tong, L.
Deposit date:2023-10-10
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Cytoplasmic binding partners of the Integrator endonuclease INTS11 and its paralog CPSF73 are required for their nuclear function.
Mol.Cell, 84, 2024
8UIC
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BU of 8uic by Molmil
Structure of the Drosophila IntS11-CG7044(dBRAT1) complex
Descriptor: FI02071p, Integrator complex subunit 11, ZINC ION
Authors:Lin, M, Tong, L.
Deposit date:2023-10-10
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Cytoplasmic binding partners of the Integrator endonuclease INTS11 and its paralog CPSF73 are required for their nuclear function.
Mol.Cell, 84, 2024
4FGM
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BU of 4fgm by Molmil
Crystal structure of the aminopeptidase N family protein Q5QTY1 from Idiomarina loihiensis. Northeast Structural Genomics Consortium Target IlR60.
Descriptor: Aminopeptidase N family protein, MALEIC ACID, ZINC ION
Authors:Vorobiev, S, Su, M, Tong, T, Kohan, E, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-06-04
Release date:2012-08-01
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.394 Å)
Cite:Crystal structure of the aminopeptidase N family protein Q5QTY1 from Idiomarina loihiensis.
To be Published
3B57
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BU of 3b57 by Molmil
Crystal structure of the Lin1889 protein (Q92AN1) from Listeria innocua. Northeast Structural Consortium target LkR65
Descriptor: Lin1889 protein, MAGNESIUM ION
Authors:Kuzin, A.P, Abashidze, M, Seetharaman, J, Benach, J, Forouhar, F, Vorobiev, S.M, Wang, H, Janjua, H, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-10-25
Release date:2007-11-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the Lin1889 protein (Q92AN1) from Listeria innocua.
To be Published

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PDB entries from 2024-10-30

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