Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4FIG
DownloadVisualize
BU of 4fig by Molmil
Catalytic domain of human PAK4
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Serine/threonine-protein kinase PAK 4
Authors:Ha, B.H, Boggon, T.J.
Deposit date:2012-06-08
Release date:2012-09-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Type II p21-activated kinases (PAKs) are regulated by an autoinhibitory pseudosubstrate.
Proc.Natl.Acad.Sci.USA, 109, 2012
3VB4
DownloadVisualize
BU of 3vb4 by Molmil
Crystal structure of SARS-CoV 3C-like protease with B4Z
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, B4Z inhibitor, ...
Authors:Chuck, C.P, Wong, K.B.
Deposit date:2011-12-31
Release date:2012-12-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design, synthesis and crystallographic analysis of nitrile-based broad-spectrum peptidomimetic inhibitors for coronavirus 3C-like proteases
Eur.J.Med.Chem., 59C, 2012
3VB5
DownloadVisualize
BU of 3vb5 by Molmil
Crystal structure of SARS-CoV 3C-like protease with C4Z
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, C4Z inhibitor
Authors:Chuck, C.P, Wong, K.B.
Deposit date:2011-12-31
Release date:2012-12-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Design, synthesis and crystallographic analysis of nitrile-based broad-spectrum peptidomimetic inhibitors for coronavirus 3C-like proteases
Eur.J.Med.Chem., 59C, 2012
3TS2
DownloadVisualize
BU of 3ts2 by Molmil
Mouse Lin28A in complex with let-7g microRNA pre-element
Descriptor: Protein lin-28 homolog A, RNA (5'-R(*GP*GP*GP*GP*UP*CP*UP*AP*UP*GP*AP*UP*AP*CP*CP*AP*CP*CP*CP*CP*GP*GP*AP*G)-3'), ZINC ION
Authors:Nam, Y, Sliz, P.
Deposit date:2011-09-11
Release date:2011-11-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Molecular Basis for Interaction of let-7 MicroRNAs with Lin28.
Cell(Cambridge,Mass.), 147, 2011
3TRZ
DownloadVisualize
BU of 3trz by Molmil
Mouse Lin28A in complex with let-7d microRNA pre-element
Descriptor: Protein lin-28 homolog A, RNA (5'-R(*GP*GP*GP*CP*AP*GP*GP*GP*AP*UP*UP*UP*UP*GP*CP*CP*CP*GP*GP*AP*G)-3'), ZINC ION
Authors:Nam, Y, Sliz, P.
Deposit date:2011-09-11
Release date:2011-11-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Basis for Interaction of let-7 MicroRNAs with Lin28.
Cell(Cambridge,Mass.), 147, 2011
4GO5
DownloadVisualize
BU of 4go5 by Molmil
The regulatory subunit of aspartate kinase from Mycobacterium tuberculosis
Descriptor: Aspartokinase
Authors:Yang, Q, Li, X.
Deposit date:2012-08-18
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural view of the regulatory subunit of aspartate kinase from Mycobacterium tuberculosis.
Protein Cell, 2, 2011
3VB6
DownloadVisualize
BU of 3vb6 by Molmil
Crystal structure of SARS-CoV 3C-like protease with C6Z
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, C6Z inhibitor
Authors:Chuck, C.P, Wong, K.B.
Deposit date:2011-12-31
Release date:2012-12-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Design, synthesis and crystallographic analysis of nitrile-based broad-spectrum peptidomimetic inhibitors for coronavirus 3C-like proteases
Eur.J.Med.Chem., 59C, 2012
3VB3
DownloadVisualize
BU of 3vb3 by Molmil
Crystal structure of SARS-CoV 3C-like protease in apo form
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, DI(HYDROXYETHYL)ETHER
Authors:Chuck, C.P, Wong, K.B.
Deposit date:2011-12-31
Release date:2012-12-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design, synthesis and crystallographic analysis of nitrile-based broad-spectrum peptidomimetic inhibitors for coronavirus 3C-like proteases
Eur.J.Med.Chem., 59C, 2012
4GO7
DownloadVisualize
BU of 4go7 by Molmil
The regulatory subunit of aspartate kinase in complex with threonine from Mycobacterium tuberculosis
Descriptor: Aspartokinase, THREONINE
Authors:Yang, Q, Li, X.
Deposit date:2012-08-19
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural view of the regulatory subunit of aspartate kinase from Mycobacterium tuberculosis.
Protein Cell, 2, 2011
4NEA
DownloadVisualize
BU of 4nea by Molmil
1.90 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) from Staphylococcus aureus in complex with NAD+ and BME-free Cys289
Descriptor: Betaine aldehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, POTASSIUM ION
Authors:Halavaty, A.S, Minasov, G, Winsor, J, Dubrovska, I, Shuvalova, L, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-10-28
Release date:2013-11-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus.
Acta Crystallogr.,Sect.D, 71, 2015
8U37
DownloadVisualize
BU of 8u37 by Molmil
Crystal structure of the catalytic domain of human PKC alpha (D463N, V568I, S657E) in complex with NVP-CJL037 at 2.48-A resolution
Descriptor: (6M)-3-amino-N-{4-[(3R,4S)-4-amino-3-methoxypiperidin-1-yl]pyridin-3-yl}-6-[3-(trifluoromethoxy)pyridin-2-yl]pyrazine-2-carboxamide, MAGNESIUM ION, Protein kinase C alpha type
Authors:Romanowski, M.J, Lam, J, Visser, M.
Deposit date:2023-09-07
Release date:2024-01-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Discovery of Darovasertib (NVP-LXS196), a Pan-PKC Inhibitor for the Treatment of Metastatic Uveal Melanoma.
J.Med.Chem., 67, 2024
8TUA
DownloadVisualize
BU of 8tua by Molmil
Full-length P-Rex1 in complex with inositol 1,3,4,5-tetrakisphosphate (IP4)
Descriptor: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein
Authors:Cash, J.N, Tesmer, J.J.G.
Deposit date:2023-08-15
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Full-length P-Rex1 in complex with inositol 1,3,4,5-tetrakisphosphate (IP4)
Elife, 2024
4NU9
DownloadVisualize
BU of 4nu9 by Molmil
2.30 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) from Staphylococcus aureus with BME-free Cys289
Descriptor: Betaine aldehyde dehydrogenase, SODIUM ION
Authors:Halavaty, A.S, Minasov, G, Dubrovska, I, Stam, J, Shuvalova, L, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-12-03
Release date:2013-12-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus.
Acta Crystallogr.,Sect.D, 71, 2015
8UAK
DownloadVisualize
BU of 8uak by Molmil
Crystal structure of the catalytic domain of human PKC alpha (D463N, V568I, S657E) in complex with Darovasertib (NVP-LXS196) at 2.82-A resolution
Descriptor: (6M)-3-amino-N-[3-(4-amino-4-methylpiperidin-1-yl)pyridin-2-yl]-6-[3-(trifluoromethyl)pyridin-2-yl]pyrazine-2-carboxamide, Protein kinase C alpha type
Authors:Romanowski, M.J, Lam, J, Visser, M.
Deposit date:2023-09-21
Release date:2024-01-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Discovery of Darovasertib (NVP-LXS196), a Pan-PKC Inhibitor for the Treatment of Metastatic Uveal Melanoma.
J.Med.Chem., 67, 2024
3GF8
DownloadVisualize
BU of 3gf8 by Molmil
Crystal structure of putative polysaccharide binding proteins (DUF1812) (NP_809975.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.20 A resolution
Descriptor: 1,2-ETHANEDIOL, putative polysaccharide binding proteins (DUF1812)
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-02-26
Release date:2009-03-24
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 A resolution
Acta Crystallogr.,Sect.F, 66, 2010
3OMG
DownloadVisualize
BU of 3omg by Molmil
Structure of human SND1 extended tudor domain in complex with the symmetrically dimethylated arginine PIWIL1 peptide R14me2s
Descriptor: Staphylococcal nuclease domain-containing protein 1, dimethylated arginine peptide R14me2s
Authors:Lam, R, Liu, K, Guo, Y.H, Bian, C.B, Xu, C, MacKenzie, F, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2010-08-26
Release date:2010-09-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for recognition of arginine methylated Piwi proteins by the extended Tudor domain.
Proc.Natl.Acad.Sci.USA, 107, 2010
4P9M
DownloadVisualize
BU of 4p9m by Molmil
Crystal structure of 8ANC195 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8ANC195 Fab heavy chain, 8ANC195 light chain
Authors:Scharf, L, Bjorkman, P.J.
Deposit date:2014-04-04
Release date:2014-05-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Antibody 8ANC195 Reveals a Site of Broad Vulnerability on the HIV-1 Envelope Spike.
Cell Rep, 7, 2014
3H41
DownloadVisualize
BU of 3h41 by Molmil
CRYSTAL STRUCTURE OF A NLPC/P60 FAMILY PROTEIN (BCE_2878) FROM BACILLUS CEREUS ATCC 10987 AT 1.79 A RESOLUTION
Descriptor: ALANINE, D-GLUTAMIC ACID, NLP/P60 family protein, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-04-17
Release date:2009-05-05
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structure of the gamma-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-[gamma]-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases
Acta Crystallogr.,Sect.F, 66, 2010
5J87
DownloadVisualize
BU of 5j87 by Molmil
Discovery of N-(3-(5-((3-acrylamido-4-(morpholine-4-carbonyl)phenyl)amino)-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-2-methylphenyl)-4-(tert-butyl)benzamide (CHMFL-BTK-01) as a Highly Selective Irreversible BTK Kinase Inhibitor
Descriptor: N-[3-(5-{[3-(acryloylamino)-4-(morpholine-4-carbonyl)phenyl]amino}-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-2-methylphenyl]-4-tert-butylbenzamide, Tyrosine-protein kinase BTK
Authors:Yun, C.H, Zhang, S.
Deposit date:2016-04-07
Release date:2017-04-19
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Discovery of N-(3-(5-((3-acrylamido-4-(morpholine-4-carbonyl)phenyl)amino)-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-2-methylphenyl)-4-(tert-butyl)benzamide (CHMFL-BTK-01) as a highly selective irreversible Bruton's tyrosine kinase (BTK) inhibitor.
Eur J Med Chem, 131, 2017
3OMC
DownloadVisualize
BU of 3omc by Molmil
Structure of human SND1 extended tudor domain in complex with the symmetrically dimethylated arginine PIWIL1 peptide R4me2s
Descriptor: CHLORIDE ION, SYNTHETIC PEPTIDE, Staphylococcal nuclease domain-containing protein 1
Authors:Lam, R, Liu, K, Guo, Y.H, Bian, C.B, Xu, C, MacKenzie, F, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2010-08-26
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural basis for recognition of arginine methylated Piwi proteins by the extended Tudor domain.
Proc.Natl.Acad.Sci.USA, 107, 2010
4P9H
DownloadVisualize
BU of 4p9h by Molmil
Crystal structure of 8ANC195 Fab in complex with gp120 of 93TH057 HIV-1 and soluble CD4 D1D2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Scharf, L, Bjorkman, P.J.
Deposit date:2014-04-04
Release date:2014-05-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Antibody 8ANC195 Reveals a Site of Broad Vulnerability on the HIV-1 Envelope Spike.
Cell Rep, 7, 2014
3HSA
DownloadVisualize
BU of 3hsa by Molmil
Crystal structure of pleckstrin homology domain (YP_926556.1) from SHEWANELLA AMAZONENSIS SB2B at 1.99 A resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, pleckstrin homology domain
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-06-10
Release date:2009-06-23
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain.
J.Mol.Biol., 396, 2010
3HBZ
DownloadVisualize
BU of 3hbz by Molmil
Crystal structure of a putative glycoside hydrolase (bt_2081) from bacteroides thetaiotaomicron vpi-5482 at 2.05 A resolution
Descriptor: ACETATE ION, CACODYLATE ION, CALCIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-05-05
Release date:2009-05-26
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 A resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism.
Acta Crystallogr.,Sect.F, 66, 2010
8CX9
DownloadVisualize
BU of 8cx9 by Molmil
Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an unusual allosteric mechanism
Descriptor: BROMIDE ION, CHLORIDE ION, Papain-like protease nsp3, ...
Authors:Singer, A.U, Slater, C.L, Patel, A, Russel, R, Mark, B.L, Sidhu, S.S.
Deposit date:2022-05-20
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Ubiquitin variants potently inhibit SARS-CoV-2 PLpro and viral replication via a novel site distal to the protease active site.
Plos Pathog., 18, 2022
8FSL
DownloadVisualize
BU of 8fsl by Molmil
Human Mesothelin bound to a neutralizing VH domain antibody
Descriptor: Mesothelin, VH domain
Authors:Calero, G.
Deposit date:2023-01-10
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Preclinical assessment of a novel human antibody VH domain targeting mesothelin as an antibody-drug conjugate.
Mol Ther Oncolytics, 31, 2023

221371

PDB entries from 2024-06-19

PDB statisticsPDBj update infoContact PDBjnumon