- PDB-5txu: 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulatio... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5txu
Title
1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (SpoIID) from Clostridium difficile in Apo Conformation
Components
Stage II sporulation protein D
Keywords
HYDROLASE / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID
Function / homology
Sporulation stage II protein D, amidase enhancer LytB / Sporulation stage II protein D, amidase enhancer LytB N-terminal / Sporulation stage II, protein D firmicutes / Stage II sporulation protein / sporulation resulting in formation of a cellular spore / metal ion binding / FORMIC ACID / Stage II sporulation protein D
Resolution: 1.95→29.06 Å / Cor.coef. Fo:Fc: 0.969 / Cor.coef. Fo:Fc free: 0.958 / SU B: 4.032 / SU ML: 0.061 / Cross valid method: THROUGHOUT / ESU R: 0.094 / ESU R Free: 0.093 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.18397
2094
4.7 %
RANDOM
Rwork
0.15886
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obs
0.16005
42138
99.87 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å