[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,732 items for (author: yu & ly)

EMDB-74574:
Consensus map of the bGDH di-hexamer in apo form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74575:
Constituent map A of the bGDH di-hexamer in apo form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74576:
Composite map of the bGDH di-hexamer in apo form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74577:
Mono-hexameric bGDH map in apo form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74578:
Consensus map of the bGDH di-hexamer in liganded form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74579:
Constituent map A of the bGDH di-hexamer in liganded form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74580:
Constituent map B of the bGDH di-hexamer in liganded form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74581:
Composite map of the bGDH di-hexamer in liganded form
Method: single particle / : Shan Z, Lyumkis D

EMDB-74582:
Mono-hexameric bGDH map in liganded form
Method: single particle / : Shan Z, Lyumkis D

PDB-9zqr:
Composite map of the bGDH di-hexamer in apo form
Method: single particle / : Shan Z, Lyumkis D

PDB-9zqs:
Mono-hexameric bGDH map in apo form
Method: single particle / : Shan Z, Lyumkis D

PDB-9zqt:
Composite map of the bGDH di-hexamer in liganded form
Method: single particle / : Shan Z, Lyumkis D

PDB-9zqu:
Mono-hexameric bGDH map in liganded form
Method: single particle / : Shan Z, Lyumkis D

EMDB-80383:
Polyrod without P-ring formed by FlgG (G65V) from the Salmonella TH26292 strain
Method: single particle / : Yamaguchi T, Kato T, Minamino T, Namba K

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-77343:
Cryo-EM global density map of BA.1-S/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77344:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77347:
Cryo-EM global density map of BA.4-S/Ab#10-M30W-S94M IgG
Method: single particle / : Du J, Pallesen J

EMDB-77348:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

PDB-36az:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

PDB-36bb:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-71737:
Human 19S proteasome bound to TXNL1 PITH domain without C-terminus
Method: single particle / : Chen X, Negi H, Walters KJ

PDB-9pmj:
Human 19S proteasome bound to TXNL1 PITH domain without C-terminus
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71326:
Cryo-EM structure of chimeric immunoglobulin M comprising bony fish and human sequences, hFcm-tFcm-chi3
Method: single particle / : Lyu M, Stadtmueller BM

EMDB-71327:
Cryo-EM structure of chimeric immunoglobulin M comprising bony fish and human sequences, hFcm-tFcm-chi4
Method: single particle / : Lyu M, Stadtmueller BM

PDB-9p6u:
Cryo-EM structure of chimeric immunoglobulin M comprising bony fish and human sequences, hFcm-tFcm-chi3
Method: single particle / : Lyu M, Stadtmueller BM

PDB-9p6v:
Cryo-EM structure of chimeric immunoglobulin M comprising bony fish and human sequences, hFcm-tFcm-chi4
Method: single particle / : Lyu M, Stadtmueller BM

EMDB-71791:
Human 19S proteasome regulatory particle (RP) without observing TXNL1 PITH domain bound
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71795:
Human 19S proteasome regulatory particle (RP) without observing TXNL1 PITH domain bound but with extra density adjacent to RPT1/RPT2
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71813:
Human 19S proteasome bound to TXNL1 PITH domain but with low density for RPT1, RPT2, and RPN1
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-76283:
Human 19S proteasome bound to TXNL1 PITH domain state 2
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-76415:
Human 19S proteasome regulatory particle bound to TXNL1 PITH domain and p28
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71740:
Human 26S proteasome bound to TXNL1 with opened gate of core particle
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-71741:
Human 26S proteasome bound to TXNL1 with closed gate of core particle
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-68536:
Cryo-EM structure of CeTECR-CeHACD complex
Method: single particle / : Yu LY, Ren RB

EMDB-71810:
Human 19S proteasome bound to TXNL1 PITH domain and PSMD5
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-55775:
apo state of CydDC in nanodisc
Method: single particle / : Changbin Z, Yongbo L, Lili Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more