[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,334 items for (author: yu & im)

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-64575:
CryoEM Structure of LmuAB-DNA complex
Method: single particle / : Li M, Zhao X, An L, Li S, Zhang K, Feng Y, Chang C

EMDB-64576:
CryoEM Structure of LmuAB Apo State
Method: single particle / : Li M, Zhao X, An L, Li S, Zhang K, Feng Y, Chang C

EMDB-64583:
type II Lamassu, LmuACB with DNA
Method: single particle / : Zhao X, Li M, Li S, Feng Y, Zhang K

EMDB-64584:
type II Lamassu, LmuA tetramer
Method: single particle / : Zhao X, Li S, Feng Y, Zhang K, Hu R, Liu L

EMDB-64585:
type II Lamassu, LmuACB from Vibrio cholerae O1 El
Method: single particle / : Zhao X, Li M, Li S, Feng Y, Zhang K, Liu L

EMDB-64586:
type II Lamassu, LmuACB from Vibrio cholerae O1 El
Method: single particle / : Zhao X, Li M, Li S, Feng Y, Zhang K, Liu L

PDB-9ux7:
CryoEM Structure of LmuAB-DNA complex
Method: single particle / : Li M, Zhao X, An L, Li S, Zhang K, Feng Y

PDB-9ux8:
CryoEM Structure of LmuAB Apo State
Method: single particle / : Li M, Zhao X, An L, Li S, Zhang K, Feng Y

PDB-9uxh:
type II Lamassu, LmuACB with DNA
Method: single particle / : Zhao X, Li M, Li S, Feng Y, Zhang K

PDB-9uxi:
type II Lamassu, LmuA tetramer
Method: single particle / : Zhao X, Li S, Feng Y, Zhang K

PDB-9uxk:
type II Lamassu, LmuACB from Vibrio cholerae O1 El
Method: single particle / : Zhao X, Li M, Li S, Feng Y, Zhang K

PDB-9uxl:
type II Lamassu, LmuACB from Vibrio cholerae O1 El
Method: single particle / : Zhao X, Li M, Li S, Feng Y, Zhang K

EMDB-73040:
cryoEM map of Apo Aspergillus fumigatus acetolactate synthase (ALS)
Method: single particle / : Hu Y

EMDB-73041:
cryoEM structure of Aspergillus fumigatus acetolactate synthase (ALS) in complex with a novel inhibitor
Method: single particle / : Hu Y

PDB-9yjz:
cryoEM structure of Apo Aspergillus fumigatus acetolactate synthase (ALS)
Method: single particle / : Hu Y

PDB-9yk0:
cryoEM structure of Aspergillus fumigatus acetolactate synthase (ALS) in complex with a novel inhibitor
Method: single particle / : Hu Y

EMDB-75890:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75895:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75896:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75898:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75899:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-66181:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

PDB-9wqv:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-49462:
N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Method: single particle / : Errico JM, Dang HV, Snell G

PDB-9nj2:
N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Method: single particle / : Errico JM, Dang HV, Snell G

EMDB-73884:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

EMDB-74737:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

EMDB-74738:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

EMDB-74739:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

EMDB-74740:
Stabilized SARS-CoV-2 S2 apo
Method: single particle / : Park S, Ward AB

EMDB-75193:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-A epitope)
Method: single particle / : Park S, Ward AB

EMDB-75194:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-B epitope)
Method: single particle / : Park S, Ward AB

EMDB-75295:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-10mu:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-9z80:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

PDB-9zt5:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

PDB-9zt6:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

PDB-9zt7:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

PDB-9zt8:
Stabilized SARS-CoV-2 S2 apo
Method: single particle / : Park S, Ward AB

EMDB-67812:
MexBYB-Ka asymmetry
Method: single particle / : Wang J, Nakagawa A, Yamashita E

EMDB-67813:
MexBYB-Ka symmetry-like
Method: single particle / : Wang J, Nakagawa A, Yamashita E

EMDB-67814:
MexBYB-apo asymmetry
Method: single particle / : Wang J, Nakagawa A, Yamashita E

EMDB-67815:
MexBYB-apo symmetry-like
Method: single particle / : Wang J, Nakagawa A, Yamashita E

PDB-22xk:
MexBYB-Ka asymmetry
Method: single particle / : Wang J, Nakagawa A, Yamashita E

PDB-22xm:
MexBYB-Ka symmetry-like
Method: single particle / : Wang J, Nakagawa A, Yamashita E

EMDB-63964:
Surface Tubular Element of Vaccinia Virus
Method: helical / : Yu F, Jin G, Liu Y, Sun Z, Lou Z

PDB-9u9h:
Surface Tubular Element of Vaccinia Virus
Method: helical / : Yu F, Jin G, Liu Y, Sun Z, Lou Z

EMDB-63769:
the complex of D14 and RGSV P3
Method: single particle / : Huang YC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more