[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,923 items for (author: ye & f)

EMDB-49696:
Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles
Method: subtomogram averaging / : Upadhye VV, Dick RA

PDB-9nqy:
Nipah Virus Matrix Lattice in Complex with Human Cell Membrane
Method: subtomogram averaging / : Upadhye VV, Dick RA

EMDB-68781:
In situ cryo sub-tomogram average of axoneme in sperm flagella from Rgs22 knockout mice
Method: subtomogram averaging / : Ye-Jun P

EMDB-70604:
Full-length LRRK2 autoinhibited
Method: single particle / : Villagran-Suarez AC, Bodrug T

EMDB-70981:
Full length LRRK2 bound to G10 DARPin
Method: single particle / : Villagran AV, Bodrug T, Leschziner A

EMDB-70982:
Full-length LRRK2 autonhibited (flexible)
Method: single particle / : Villagran-Suarez A, Bodrug T, Alegrio-Louro J, Leschziner A

EMDB-71012:
Full LRRK2 (R1441C mutant) after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

EMDB-72555:
Full length LRRK2 after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

EMDB-72556:
Full length LRRK2 (G2019S) after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

EMDB-73338:
C-terminal LRRK2 bound to C12 DARPin
Method: single particle / : Sanz-Murillo M, Leschziner A

PDB-9om2:
Full-length LRRK2 autoinhibited
Method: single particle / : Villagran-Suarez AC, Bodrug T

PDB-9oxh:
Full length LRRK2 bound to G10 DARPin
Method: single particle / : Villagran AV, Bodrug T, Leschziner A

PDB-9oxi:
Full-length LRRK2 autonhibited (flexible)
Method: single particle / : Villagran-Suarez A, Bodrug T

PDB-9oya:
Full LRRK2 (R1441C mutant) after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

PDB-9y67:
Full length LRRK2 after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

PDB-9y68:
Full length LRRK2 (G2019S) after symmetry expansion
Method: single particle / : Villagran Suarez AC, Bodrug T

PDB-9yqk:
C-terminal LRRK2 bound to C12 DARPin
Method: single particle / : Sanz-Murillo M, Leschziner A

EMDB-69840:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (3:1 stoichiometry) in apo state (M2223 apo, without symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69841:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (3:1 stoichiometry) with CLM142 (M2223 CLM142, without symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69842:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (3:1 stoichiometry) with CLM142 and PIP2 in open state (M2223 open, without symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69843:
Cryo-EM structure of the human wild-type KCNQ2/KCNQ3 heterotetramer (3:1 stoichiometry) in apo state (M2223 WT, without symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69844:
Cryo-EM structure of the human wild-type KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) in apo state (M2233 WT, without symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69845:
Cryo-EM structure of the human wild-type KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) in apo state (M2323 WT, without symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69846:
Cryo-EM structure of the human wild-type KCNQ2/KCNQ3 heterotetramer (1:3 stoichiometry) in apo state (M2333 WT, without symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69847:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (3:1 stoichiometry) in apo state (M2223 apo, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69848:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) in apo state (M2233 apo, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69849:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) in apo state (M2323 apo, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69850:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (1:3 stoichiometry) in apo state (M2333 apo, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69851:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (3:1 stoichiometry) with CLM142 (M2223 CLM142, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69852:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) with CLM142 (M2233 CLM142, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69853:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) with CLM142 (M2323 CLM142, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69854:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (1:3 stoichiometry) with CLM142 (M2333 CLM142, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69855:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (3:1 stoichiometry) with CLM142 and PIP2 in open state (M2223 open, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69856:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) with CLM142 and PIP2 in open state (M2233 open, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69857:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (2:2 stoichiometry) with CLM142 and PIP2 in open state (M2323 open, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-69858:
Cryo-EM structure of the human KCNQ2/KCNQ3 heterotetramer (1:3 stoichiometry) with CLM142 and PIP2 in open state (M2333 open, with symmetry expansion)
Method: single particle / : Wang YF, Yang H, Qu YN, Shen HZ

EMDB-71566:
Structure of EBOV GP, MWAC-3634, and Nanosota-EB2 ternary complex
Method: single particle / : Bu F, Ye G, Li F

PDB-9pel:
Structure of EBOV GP, MWAC-3634, and Nanosota-EB2 ternary complex
Method: single particle / : Bu F, Ye G, Li F

EMDB-73703:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73704:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73705:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73707:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex (RECC), tRNA focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-72245:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72246:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72247:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72249:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72252:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72253:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72254:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72259:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more