[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 333 items for (author: yang & ht)

EMDB-74020:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Sibert BS, Parrell D, Yang JE, Kumar A, Larson MR, Montemayor EJ, Maindola P, Cai K, Wright ER

PDB-9zc2:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Montemayor EJ, Sibert BS, Parrell D, Yang JE, Larson MR, Gaines M, Kumar A, Maindola P, Cai K, Woods M, Wright ER

EMDB-70808:
Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Method: single particle / : Lv H, Wu NC

PDB-9osr:
Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Method: single particle / : Lv H, Wu NC

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2t:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2u:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9ppv:
In situ MicroED structure of human eosinophil major basic protein-1
Method: electron crystallography / : Yang JE, Bingman CA, Mitchell J, Mosher D, Wright ER

PDB-9psk:
In situ MicroED structure of IL-33 activated human eosinophil major basic protein-1
Method: electron crystallography / : Yang JE, Bingman CA, Mitchell J, Mosher D, Wright ER

PDB-9pse:
In situ MicroED structure of IL-5 activated human eosinophil major basic protein-1
Method: electron crystallography / : Yang JE, Bingman CA, Mitchell J, Mosher D, Wright ER

EMDB-47128:
Cryo-EM structure of the T33-549 tetrahedral cage
Method: single particle / : Redler R, Coudray N, Lubner J, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-52121:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52122:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52123:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer in the presence of dCTP in solution (not bound)
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52124:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with dCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52125:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer in the presence of 5mdCTP in solution (not bound)
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52126:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with 5mdCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hfq:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hfr:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hfs:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with dCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hft:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with 5mdCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-44468:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

EMDB-44472:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP without Trp
Method: single particle / : Yang H, Stachowski K, Foster M

EMDB-44473:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant T49A/T52A dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

PDB-9bds:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

PDB-9be7:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP without Trp
Method: single particle / : Yang H, Stachowski K, Foster M

PDB-9be8:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant T49A/T52A dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

EMDB-60519:
Cryo-EM structure of trimethylamine transporter TmaT
Method: single particle / : Chao G

EMDB-60542:
Cryo-EM structure of trimethylamine transporter TmaT binding with TMA
Method: single particle / : Chao G

EMDB-60548:
Cryo-EM structure of TmaT-TMA complexes
Method: single particle / : Chao G

PDB-9dkz:
In situ microED structure of the Eosinophil major basic protein-1
Method: electron crystallography / : Yang JE, Bingman CA, Mitchell J, Mosher D, Wright ER

EMDB-42767:
Caulobacter crescentus FljL flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

EMDB-45500:
Caulobacter crescentus FljN flagellar filament (symmetrized)
Method: helical / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

EMDB-45503:
Caulobacter crescentus FljJK flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

EMDB-45504:
Caulobacter crescentus FljJL flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

EMDB-45505:
Caulobacter crescentus FljJM flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

EMDB-45506:
Caulobacter crescentus FljJN flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

PDB-8uxk:
Caulobacter crescentus FljL flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

PDB-9cef:
Caulobacter crescentus FljN flagellar filament (symmetrized)
Method: helical / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

PDB-9cej:
Caulobacter crescentus FljJK flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

PDB-9cem:
Caulobacter crescentus FljJL flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

PDB-9ceo:
Caulobacter crescentus FljJM flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

PDB-9cep:
Caulobacter crescentus FljJN flagellar filament (asymmetrical)
Method: single particle / : Sanchez JC, Montemayor EJ, Ploscariu NT, Parrell D, Baumgardt JK, Yang JE, Sibert B, Cai K, Wright ER

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more