[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 16,876 items for (author: yan & w)

PDB-9l36:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-64829:
cryoEM structure of HEP-50768-bound MRGPRX4-Gq complex
Method: single particle / : Wang C, Zhang M, Cao C

EMDB-64830:
Local refine map of HEP-50768-bound MRGPRX4
Method: single particle / : Wang C, Zhang M, Cao C

PDB-9v81:
cryoEM structure of HEP-50768-bound MRGPRX4-Gq complex
Method: single particle / : Wang C, Zhang M, Cao C

PDB-9v82:
Local refine map of HEP-50768-bound MRGPRX4
Method: single particle / : Wang C, Zhang M, Cao C

EMDB-67523:
Epitope and functional classification of human neutralizing antibodies against SFTSV Gn
Method: single particle / : Wang QR, Jian FC, Wang YX

PDB-21ao:
Epitope and functional classification of human neutralizing antibodies against SFTSV Gn
Method: single particle / : Wang QR, Jian FC, Wang YX

EMDB-66468:
Cryo-EM structure of the GLP-1-bound human GLP-1R-Gi complex
Method: single particle / : Zhou QT

PDB-9x20:
Cryo-EM structure of the GLP-1-bound human GLP-1R-Gi complex
Method: single particle / : Zhou QT, Zhou QT

EMDB-62778:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62780:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62861:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

PDB-9l2o:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l2t:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l6p:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

EMDB-70743:
Nucleosome subtomogram average from chromatin droplets reconstituted with 30 bp linker DNA
Method: subtomogram averaging / : Zhou H, Rosen M

EMDB-70745:
Nucleosome subtomogram average from chromatin droplets reconstituted with 25 bp linker DNA
Method: subtomogram averaging / : Zhou H, Rosen M

EMDB-62205:
Cryo-EM structure of the SPS3-FBN5 complex in a 2:2 state (class 2)
Method: single particle / : Xiao H, Wang YW, Zhu P, Yang GF

EMDB-64461:
HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA
Method: single particle / : Yang B, Wang Q, Sun SW, Zhang X

PDB-9urm:
HRV14 3C in complex with single chain antibody YDF and cloverleafRNA-conformation1 splitRNA
Method: single particle / : Yang B, Wang Q, Sun SW, Zhang X

EMDB-64741:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

PDB-9v2v:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Li H, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

EMDB-62207:
Cryo-EM structure of the SPS3-FBN5 complex in a 2:1 state
Method: single particle / : Xiao H, Wang YW, Zhu P, Yang GF

PDB-9kaf:
Cryo-EM structure of the SPS3-FBN5 complex in a 2:1 state
Method: single particle / : Xiao H, Wang YW, Zhu P, Yang GF

EMDB-62208:
Cryo-EM structure of the SPS3-FBN5 complex in a 2:2 state (class 4)
Method: single particle / : Xiao H, Wang YW, Zhu P, Yang GF

PDB-9kag:
Cryo-EM structure of the SPS3-FBN5 complex in a 2:2 state (class 4)
Method: single particle / : Xiao H, Wang YW, Zhu P, Yang GF

PDB-9pik:
Structure of the two-pore domain, outwardly rectifying potassium (TOK1) from Candida albicans, overall structure
Method: single particle / : Durocher B, Manville RW, Yan R, Yu Z, Abbott GW, Miller AN

PDB-9pko:
Structure of the two-pore domain, outwardly rectifying potassium (TOK1) from Candida albicans, Up conformation
Method: single particle / : Durocher B, Manville RW, Yan R, Yu Z, Abbott GW, Miller AN

PDB-9pkp:
Structure of the two-pore domain, outwardly rectifying potassium (TOK1) from Candida albicans, Down conformation
Method: single particle / : Durocher B, Manville RW, Yan R, Yu Z, Abbott GW, Miller AN

EMDB-71075:
Consensus map of CXCL9-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71077:
Focused map of CXCL9-CXCR3
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71078:
Focused map of Gi-scFv16 (components of CXCL9-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71079:
Composite map of CXCL9-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71080:
Composite map of CXCL10-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71081:
Composite map of CXCL11-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71082:
consensus map of CXCL11-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71083:
Focused map of CXCL11-CXCR3 (components of CXCL11-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71084:
Focused map of Gi_scFv16 (components of CXCL11-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71085:
consensus map of CXCL10-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71086:
Focused map of CXCL10-CXCR3 (components of CXCL10-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71087:
Focused map of Gi-scFv16 (components of CXCL10-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

PDB-9p0k:
Composite map of CXCL9-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

PDB-9p0l:
Composite map of CXCL10-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

PDB-9p0m:
Composite map of CXCL11-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-63446:
The head region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63447:
The head-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63448:
The hinge-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63449:
HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwi:
The head region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwj:
The head-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more