[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 154 items for (author: xu & sr)

EMDB-67857:
Cryo-EM structure of the rat IgE-Fc in complex with FcgammaRIV
Method: single particle / : Xu SR, Du S, Xiao JY

EMDB-67855:
Cryo-EM structure of mouse IgG2b-Fc in complex with FcgammaRIV
Method: single particle / : Xu SR, Du S, Xiao JY

EMDB-67856:
Cryo-EM structure of the rat IgE-Fc in complex with FcgammaRIIB
Method: single particle / : Xu SR, Du S, Xiao JY

EMDB-65623:
cryo-EM structure of acetyl-CoA carboxyltransferase holoenzyme dimer from Shewanella oneidensis, mutant E1238A
Method: single particle / : Wang W, Han SR, Xu YY, Gao HC

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

PDB-31mr:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-55425:
Cryo-EM reconstruction of the Kinesin KIF5A motor domain decorated GMPCPP microtubule
Method: single particle / : Munoz-Hernandez H, Wieczorek M

EMDB-55431:
Cryo-EM reconstruction of undecorated GDP microtubule
Method: single particle / : Munoz-Hernandez H, Wieczorek M

EMDB-55440:
Cryo-EM reconstruction of undecorated GDP microtubule (13-3)
Method: single particle / : Munoz-Hernandez H, Wieczorek M

EMDB-55444:
Cryo-EM reconstruction of the Kinesin KIF5A motor domain decorated GMPCPP microtubule (14-3)
Method: single particle / : Munoz-Hernandez H, Wieczorek M

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-63977:
Cryo-EM structure of neddylated CUL2-RBX1-FEM1C-ELOB-ELOC
Method: single particle / : Zhou H, Xu C

PDB-9ua3:
Cryo-EM structure of neddylated CUL2-RBX1-FEM1C-ELOB-ELOC
Method: single particle / : Zhou H, Xu C

EMDB-72964:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-72965:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yha:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yhb:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-62392:
cryo-EM structure of acetyl-CoA carboxyltransferase holoenzyme dimer from Shewanella oneidensis, mutant E1238A, complexed with ADP
Method: single particle / : Wang W, Han SR, Xu YY, Gao HC

EMDB-70663:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70666:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70190:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan epitope) following mRNA multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70192:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan and gp41-base epitopes) following protein multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70664:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-71718:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

PDB-9pln:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-71783:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

PDB-9pqd:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and compound Z7149
Method: single particle / : Srinivasan K, Wu Y, Billesboelle C, Kim JY, Manglik A, Shoichet BK

EMDB-51936:
Complex 5 30S-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-51964:
Complex 1 30S-IF1-IF2-IF3-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-51965:
Complex 2 (HEAD) 30S-IF1-IF3-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-51966:
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-51967:
Complex 3 (HEAD) 30S-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-51968:
Complex 3 (BODY) 30S-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-51969:
Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-51970:
Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

EMDB-71719:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

PDB-9plo:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-60690:
cryo-EM structure of incomplete acetyl-CoA carboxyltransferase dimer from Shewanella without BCCP domain
Method: single particle / : Wang W, Han SR, Xu YY, Gao HC

EMDB-60691:
cryo-EM structure of incomplete acetyl-CoA carboxyltransferase dimer from Shewanella without BCCP domain
Method: single particle / : Wang W, Han SR, Xu YY, Gao HC

EMDB-44962:
Tetrameric Complex of full-length HIV-1 integrase protein bound to the integrase binding domain of LEDGF/p75
Method: single particle / : Jing T, Shan Z, Lyumkis D, Biswas A

EMDB-45103:
Consensus map of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45104:
Top half of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45150:
Bottom half of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45151:
Hexadecamer of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z, Biswas A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more