[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 707 items for (author: xiao & yn)

EMDB-70743:
Nucleosome subtomogram average from chromatin droplets reconstituted with 30 bp linker DNA
Method: subtomogram averaging / : Zhou H, Rosen M

EMDB-70745:
Nucleosome subtomogram average from chromatin droplets reconstituted with 25 bp linker DNA
Method: subtomogram averaging / : Zhou H, Rosen M

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

PDB-22xc:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-49923:
Subtomogram average of nucleosome structure extracted from the HeLa cell nuclei
Method: subtomogram averaging / : Zhou H, Hutchings J, Villa E, Rosen M

EMDB-49924:
Subtomogram averaging of nucleosomes in reconstituted chromatin condensates
Method: subtomogram averaging / : Zhou H, Hutchings J, Villa E, Rosen M

EMDB-49929:
Subtomogram average of nucleosome from NIH3T3 cells, class 2
Method: subtomogram averaging / : Zhou H, Hutchings J, Villa E, Rosen M

EMDB-53275:
Subtomogram average of nucleosome from NIH3T3 cells, class 1
Method: subtomogram averaging / : Zhou H, Hutchings J, Villa E, Rosen M

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-62660:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62661:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-183
Method: single particle / : Qiu YN, Sun L

EMDB-62680:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62687:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62691:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62729:
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62731:
Focused refinement up-RBD1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62733:
Focused refinement up-RBD2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62734:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62744:
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62745:
Focused refinement trimer1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62746:
Focused refinement trimer2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62777:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-65093:
Zea mays URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

EMDB-66597:
Arabidopsis thaliana URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

PDB-9vim:
Zea mays URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

PDB-9x5u:
Arabidopsis thaliana URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

EMDB-49949:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49950:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49951:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz3:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz4:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz5:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-72068:
RQk18_FP_mAb_05 in complex with AMC016 and PGT122
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

EMDB-71559:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

PDB-9pee:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-47927:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

EMDB-47931:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

PDB-9ecv:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

PDB-9ed2:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

EMDB-46426:
Myosin force-evoked superhelical F-actin
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46427:
Control myosin-tethered F-actin -ATP 1
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46428:
Control myosin-tethered F-actin -ATP 2
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46429:
Consensus force-activated alpha-catenin-F-actin complex
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

EMDB-46431:
3DVA sorted force-activated alpha-catenin-F-actin complex
Method: single particle / : Reynolds MJ, Carl AG, Alushin GM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more