[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 117 items for (author: wright & av)

EMDB-70618:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Method: single particle / : Duan HD, Li H

PDB-9omv:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Method: single particle / : Duan HD, Li H

EMDB-70093:
Cryo-EM structure of in-vitro alpha-synuclein fibril bound with Exemplar-6 PET-radioligand
Method: helical / : Sanchez JC, Perez RM, Borcik CG, Guarino DS, Dhavala DD, Baumgardt JK, Shaffer KD, Kotzbauer PT, Mach RH, Rienstra CM, Petersson EJ, Wright ER

PDB-9o4b:
Cryo-EM structure of in-vitro alpha-synuclein fibril bound with Exemplar-6 PET-radioligand
Method: helical / : Sanchez JC, Perez RM, Borcik CG, Guarino DS, Dhavala DD, Baumgardt JK, Shaffer KD, Kotzbauer PT, Mach RH, Rienstra CM, Petersson EJ, Wright ER

EMDB-49656:
Rabbit RB142 polyclonal Fab in complex with HIV-1 1086C NFL Env trimer
Method: single particle / : Lin RN, Torres JL, Ozorowski G, Ward AB

EMDB-52431:
CryoEM structure of cyclised H-pilus
Method: helical / : Ishimoto N, Beis K

PDB-9hvc:
CryoEM structure of cyclised H-pilus
Method: helical / : Ishimoto N, Beis K

EMDB-47339:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 in the E1 state
Method: single particle / : Duan HD, Li H

PDB-9dzv:
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 in the E1 state
Method: single particle / : Duan HD, Li H

EMDB-42775:
Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)
Method: single particle / : Hayes BK, Venugopal H, McGowan S

EMDB-42792:
Acinetobacter baumannii Tse15 Rhs effector
Method: single particle / : Hayes BK, Venugopal H, McGowan S

PDB-8uxt:
Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)
Method: single particle / : Hayes BK, Venugopal H, McGowan S

PDB-8uy4:
Acinetobacter baumannii Tse15 Rhs effector
Method: single particle / : Hayes BK, Venugopal H, McGowan S

EMDB-18639:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

EMDB-18649:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

EMDB-19002:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8qsq:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

PDB-8qtd:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

PDB-8r8k:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-41815:
Cryo-EM of Caulobacter crescentus Tad pilus
Method: helical / : Sonani RR, Sanchez JC, Baumgardt JK, Wright ER, Egelman EH

EMDB-41968:
Cryo-EM of Vibrio cholera toxin co-regulated pilus (TCP)
Method: helical / : Sonani RR, Kundra S, Craig L, Egelman EH

EMDB-42279:
Cryo-EM of Vibrio cholerae toxin co-regulated pilus - asymmetric reconstruction
Method: single particle / : Sonani RR, Kundra S, Craig L, Egelman EH

PDB-8u1k:
Cryo-EM of Caulobacter crescentus Tad pilus
Method: helical / : Sonani RR, Sanchez JC, Baumgardt JK, Wright ER, Egelman EH

PDB-8uhf:
Cryo-EM of Vibrio cholerae toxin co-regulated pilus - asymmetric reconstruction
Method: single particle / : Sonani RR, Kundra S, Craig L, Egelman EH

EMDB-41265:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

EMDB-41266:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

PDB-8thi:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

PDB-8thj:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Method: single particle / : Davies JS, Currie MC, Dobson RCJ, North RA

EMDB-28776:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28777:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28778:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28779:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0p:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0q:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0r:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0s:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-15971:
SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8bcz:
SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-15775:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

PDB-8b01:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

EMDB-27393:
D. vulgaris type I-C Cascade bound to dsDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27403:
type I-C Cascade bound to ssDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27412:
type I-C Cascade bound to AcrIF2
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dej:
D. vulgaris type I-C Cascade bound to dsDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dfa:
type I-C Cascade bound to ssDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dfs:
type I-C Cascade bound to AcrIF2
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27402:
type I-C Cascade
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27409:
type I-C Cascade bound to AcrIC4
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dex:
type I-C Cascade
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dfo:
type I-C Cascade bound to AcrIC4
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more