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Showing 1 - 50 of 187 items for (author: takizawa & y)

EMDB-64225:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64226:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujs:
RNA polymerase II elongation complex stalled at SHL(-4) of the H3-H4 octasome
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-9ujt:
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Method: single particle / : Ho CH, Nozawa K, Nishimura M, Oi M, Kujirai T, Ogasawara M, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-64920:
Cryo-EM structure of CARD1 ectodomain
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-64934:
Cryo-EM structure of a CARD1 ectodomain H197A/H199A/H222A mutant
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-65715:
Cryo-EM map of the nucleosome reconstituted in E. coli cells
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

EMDB-65716:
Cryo-EM structure of the close-packed di-hexasome (CPDH)
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

PDB-9w74:
Cryo-EM structure of the close-packed di-hexasome (CPDH)
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

EMDB-61242:
Cryo-EM structure of native NCP-UV-DDB complex
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61243:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61246:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-2
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61247:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-3
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61248:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

PDB-9j8w:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-60592:
RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Hirano R, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-60593:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

PDB-9ii7:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-38604:
RNA polymerase II elongation complex with upstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38607:
RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38624:
RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38717:
RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xrj:
RNA polymerase II elongation complex with upstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xrm:
RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xso:
RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xvs:
RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-63078:
Cryo-EM structure of the native HeLa nucleosome
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63079:
Cryo-EM structure of the native HeLa nucleosome in poly-nucleosomes (class 1)
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63080:
Cryo-EM structure of the native HeLa nucleosome in poly-nucleosomes (class 2)
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63081:
Cryo-EM structure of the native HeLa nucleosome in poly-nucleosomes (class 3)
Method: single particle / : Hatazawa S, Takizawa Y, Kurumizaka H

EMDB-63144:
Subtomogram average of the HeLa nucleosome
Method: subtomogram averaging / : Hatazawa S, Fukuda Y, Takizawa Y, Kurumizaka H

EMDB-63145:
Subtomogram average of the HeLa nucleosome for mapping back
Method: subtomogram averaging / : Hatazawa S, Fukuda Y, Takizawa Y, Kurumizaka H

EMDB-62193:
Cryo-EM structure of the human CENP-A-H4 octasome.
Method: single particle / : Nozawa K, Takizawa Y, Kurumizaka H

PDB-9k9l:
Cryo-EM structure of the human CENP-A-H4 octasome.
Method: single particle / : Nozawa K, Takizawa Y, Kurumizaka H

EMDB-37121:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37149:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kd1:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8ke0:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37115:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38443:
193 bp Widom601L nucleosome (closed)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38444:
193 bp Widom601L nucleosome (middle)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38445:
193 bp Widom601L nucleosome (open)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kcy:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-61231:
Cryo-EM structure of BAF-Lamin A/C IgF-nucleosome complex (High mobility complex)
Method: single particle / : Horikoshi N, Miyake R, Sogawa-Fujiwara C, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-61232:
Cryo-EM structure of BAF-Lamin A/C IgF-nucleosome complex (Low mobility complex)
Method: single particle / : Horikoshi N, Miyake R, Sogawa-Fujiwara C, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-61233:
Cryo-EM structure of BAF-Lamin A/C IgF-H1-nucleosome complex
Method: single particle / : Horikoshi N, Miyake R, Sogawa-Fujiwara C, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-9j8m:
Cryo-EM structure of BAF-Lamin A/C IgF-nucleosome complex (High mobility complex)
Method: single particle / : Horikoshi N, Miyake R, Sogawa-Fujiwara C, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-9j8n:
Cryo-EM structure of BAF-Lamin A/C IgF-nucleosome complex (Low mobility complex)
Method: single particle / : Horikoshi N, Miyake R, Sogawa-Fujiwara C, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-9j8o:
Cryo-EM structure of BAF-Lamin A/C IgF-H1-nucleosome complex
Method: single particle / : Horikoshi N, Miyake R, Sogawa-Fujiwara C, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38877:
Cryo-EM structure of the overlapping di-nucleosome (closed form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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