[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 252 items for (author: song & gj)

EMDB-62841:
Cryo-EM structure of the thermophile spliceosome (state ILS)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-62842:
Cryo-EM structure of the thermophile spliceosome (state B*Q1)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-62843:
Cryo-EM structure of the thermophile spliceosome (state B*Q2)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-62844:
Cryo-EM structure of the thermophile spliceosome (state B*Q2 focus DHX15)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

PDB-9l5r:
Cryo-EM structure of the thermophile spliceosome (state ILS)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

PDB-9l5s:
Cryo-EM structure of the thermophile spliceosome (state B*Q1)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

PDB-9l5t:
Cryo-EM structure of the thermophile spliceosome (state B*Q2)
Method: single particle / : Li Y, Fischer P, Wang M, Yuan R, Meng W, Luehrmann R, Lau B, Hurt E, Cheng J

EMDB-39085:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+1C)
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

EMDB-39086:
Structure of the SecA-SecY complex with the substrate HmBRI-3TM
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

EMDB-39087:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C)
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

EMDB-39088:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+20C)
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

EMDB-39090:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C) treated with DTT
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

EMDB-39106:
Structure of the SecA-SecY complex with the substrate HmBRI-7TM
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

PDB-8y9y:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+1C)
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

PDB-8y9z:
Structure of the SecA-SecY complex with the substrate HmBRI-3TM
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

PDB-8ya0:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C)
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

PDB-8ya2:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+20C)
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

PDB-8ya3:
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C) treated with DTT
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

PDB-8yas:
Structure of the SecA-SecY complex with the substrate HmBRI-7TM
Method: single particle / : Ou X, Ma C, Sun D, Xu J, Wu X, Gao N, Li L

EMDB-39956:
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39957:
Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39958:
Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39959:
Cryo-EM structure of the human ubiquitylated 40S ribosome dimer with RIOK3
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39960:
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3 (state Deg1)
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39962:
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3 (state Deg2)
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39963:
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3 (state Deg3)
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39964:
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3 (state Deg4)
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

PDB-8zdb:
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

PDB-8zdc:
Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

PDB-8zdd:
Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
Method: single particle / : Huang Z, Wang M, Li Y, Beckmann R, Cheng J

EMDB-39345:
Cryo-EM structure of human apo GPR156
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

EMDB-39356:
Cryo-EM structure of human GPR156-Gi3 complex
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

PDB-8yjp:
Cryo-EM structure of human apo GPR156
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

PDB-8yk0:
Cryo-EM structure of human GPR156-Gi3 complex
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

EMDB-61766:
Cryo-EM structure of neutralizing antibody 8G3 in complex with BA.1 RBD
Method: single particle / : Li J, Li H

PDB-9js4:
Cryo-EM structure of neutralizing antibody 8G3 in complex with BA.1 RBD
Method: single particle / : Li J, Li H

EMDB-61104:
cryo-EM structure of zebrafish GPR4-Gs complex at pH 8.5
Method: single particle / : Ma YT, Tang MY, Song GJ, Ru H

EMDB-39290:
Cryo-EM structure of the trimeric HerA
Method: single particle / : Zhen X, Xiong X

PDB-8yho:
Cryo-EM structure of the trimeric HerA
Method: single particle / : Zhen X, Xiong X

EMDB-39302:
Cryo-EM structure of the trimeric HerA
Method: single particle / : Zhen X, Zhou B, Xiong X

PDB-8yhx:
Cryo-EM structure of the trimeric HerA
Method: single particle / : Zhen X, Zhou B, Xiong X

EMDB-37646:
Fzd4/DEP complex
Method: single particle / : He Y, Qian Y

EMDB-37647:
Fzd4/DEP complex (local refined)
Method: single particle / : He Y, Qian Y

PDB-8wm9:
Fzd4/DEP complex
Method: single particle / : He Y, Qian Y

PDB-8wma:
Fzd4/DEP complex (local refined)
Method: single particle / : He Y, Qian Y

EMDB-37637:
Structural basis for the nucleosome binding and chromatin compaction by the linker histone H5
Method: single particle / : Li WY, Song F, Zhu P

EMDB-37638:
Structural basis for the nucleosome binding and chromatin compaction by the linker histone H5
Method: single particle / : Li WY, Song F, Zhu P

EMDB-38407:
Structural basis for the linker histone H5-nucleosome binding and chromatin compaction
Method: single particle / : Li WY, Song F, Zhu P

PDB-8xjv:
Structural basis for the linker histone H5-nucleosome binding and chromatin compaction
Method: single particle / : Li WY, Song F, Zhu P

EMDB-38899:
Ebola virus glycoprotein in complex with a broadly neutralizing antibody 2G1
Method: single particle / : Fan PF, Yu CM, Chen W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more