[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 145 items for (author: smith & ef)

EMDB-45728:
Structure of ecarin from the venom of Kenyan saw-scaled viper in complex with the Fab of neutralizing antibody H11
Method: single particle / : Mindrebo JT, Lander GC

PDB-9clp:
Structure of ecarin from the venom of Kenyan saw-scaled viper in complex with the Fab of neutralizing antibody H11
Method: single particle / : Mindrebo JT, Lander GC

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

PDB-8sx3:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-41024:
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41025:
MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41026:
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41027:
MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41034:
MD64 N332-GT5 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41035:
MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t49:
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4a:
MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4b:
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4d:
MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4k:
MD64 N332-GT5 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4l:
MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41153:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-41154:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-28153:
cryo-EM structure of TMEM63A in nanodisc
Method: single particle / : Zheng W, Fu TM, Holt JR

EMDB-28154:
cryo-EM structure of TMEM63B in LMNG
Method: single particle / : Zheng W, Fu TM, Holt JR

PDB-8ehw:
cryo-EM structure of TMEM63A in nanodisc
Method: single particle / : Zheng W, Fu TM, Holt JR

PDB-8ehx:
cryo-EM structure of TMEM63B in LMNG
Method: single particle / : Zheng W, Fu TM, Holt JR

EMDB-26862:
CryoEM structure of the TIR domain from AbTir in complex with 3AD
Method: helical / : Li S, Nanson JD, Manik MK, Gu W, Landsberg MJ, Ve T, Kobe B

PDB-7uxu:
CryoEM structure of the TIR domain from AbTir in complex with 3AD
Method: helical / : Li S, Nanson JD, Manik MK, Gu W, Landsberg MJ, Ve T, Kobe B

EMDB-27730:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-27731:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv1:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv2:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-24211:
Mouse norovirus (MNV-1) capsid at pH 5.0
Method: single particle / : Smith TJ

EMDB-24226:
Mouse norovirus (MNV-1) capsid at pH 7.5
Method: single particle / : Smith TJ

PDB-7n6y:
Mouse norovirus (MNV-1) capsid at pH 5.0
Method: single particle / : Smith TJ

PDB-7n7f:
Mouse norovirus (MNV-1) capsid at pH 7.5
Method: single particle / : Smith TJ

EMDB-24533:
SARS-CoV-2 spike protein bound to the S2P6 and S2M11 Fab fragments
Method: single particle / : Sauer MM, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-11610:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with megabody MbNbF3c7HopQ
Method: single particle / : Uchanski T, Masiulis S

EMDB-4542:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with histamine and megabody Mb25
Method: single particle / : Uchanski T, Masiulis S

PDB-6qfa:
CryoEM structure of a beta3K279T GABA(A)R homomer in complex with histamine and megabody Mb25
Method: single particle / : Uchanski T, Masiulis S, Fischer B, Kalichuk V, Wohlkoening A, Zoegg T, Remaut H, Vranken W, Aricescu AR, Pardon E, Steyaert J

EMDB-23970:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23971:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msw:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msx:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23187:
Mouse Norovirus Protruding domain complexed with neutralizing Fab fragment from mAb A6.2
Method: single particle / : Smith TJ, Sherman MB

PDB-7l5j:
Mouse Norovirus Protruding domain complexed with neutralizing Fab fragment from mAb A6.2
Method: single particle / : Smith TJ, Sherman MB

EMDB-23156:
SARS-CoV 2 Spike Protein bound to LY-CoV555
Method: single particle / : Goldsmith JA, McLellan JS

PDB-7l3n:
SARS-CoV 2 Spike Protein bound to LY-CoV555
Method: single particle / : Goldsmith JA, McLellan JS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more