[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,560 items for (author: shin & j)

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-41497:
Structure of the H-lobe of human MED12
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41500:
Structure of the kinase and central lobes of human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-77042:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77043:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77047:
Apoferritin with crossed laser phase plate (xLPP), xLPP-off, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-63852:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

PDB-9u4o:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

EMDB-70787:
Designed one-component T=3 quasisymmetric protein nanocage
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70792:
Designed one-component T=3 quasisymmetric protein nanocage pentamer sub-particle region
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70797:
Designed one-component T=13 quasisymmetric protein nanocage pentamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70798:
Designed one-component T=13 quasisymmetric protein nanocage hexamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-80237:
A complex of PTH1R/Gs bound to a PTHrP analogue with five beta-amino acids
Method: single particle / : Cary BP, Wootten D, Sexton PM, Gellman SH, Wook TK, Shin J, Gerrard EJ

EMDB-80238:
A complex of PTH1R/Gs bound to a PTHrP analogue with three beta-amino acids
Method: single particle / : Cary BP, Wootten D, Sexton PM, Gellman SH, Wook TK, Shin J, Gerrard EJ

PDB-25nv:
A complex of PTH1R/Gs bound to a PTHrP analogue with five beta-amino acids
Method: single particle / : Cary BP, Wootten D, Sexton PM, Gellman SH, Wook TK, Shin J, Gerrard EJ

PDB-25nx:
A complex of PTH1R/Gs bound to a PTHrP analogue with three beta-amino acids
Method: single particle / : Cary BP, Wootten D, Sexton PM, Gellman SH, Wook TK, Shin J, Gerrard EJ

EMDB-66531:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66532:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 1
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66533:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 2
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66534:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 3
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66535:
Cryo-EM structure of Streptococcus thermophilus FoeAB E504Q mutant in complex with ATP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66536:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ATP and ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66537:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP in peptidisc
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66953:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP
Method: single particle / : Tanabe M, Taguchi A, Moriya T, Nishino K

PDB-9x46:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x47:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 1
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x48:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 2
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x49:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 3
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x4a:
Cryo-EM structure of Streptococcus thermophilus FoeAB E504Q mutant in complex with ATP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x4b:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ATP and ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x4c:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP in peptidisc
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-80137:
Cryo-EM structure of MasR(FL)-Gq
Method: single particle / : Suzuki S, Nishikawa K, Fujiyoshi Y, Akio K

EMDB-80138:
Cryo-EM structure of MasR(del2-25)-Gq
Method: single particle / : Suzuki S, Nishikawa K, Fujiyoshi Y, Akio K

PDB-25ik:
Cryo-EM structure of MasR(FL)-Gq
Method: single particle / : Suzuki S, Nishikawa K, Fujiyoshi Y

PDB-25il:
Cryo-EM structure of MasR(del2-25)-Gq
Method: single particle / : Suzuki S, Nishikawa K, Fujiyoshi Y

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-64944:
Cryo-EM structure of Bacillus halodurans ComEC
Method: single particle / : Hirano H, Nureki O

EMDB-64949:
Cryo-EM structure of Shewanella decolorationis ComEC
Method: single particle / : Hirano H, Nureki O

EMDB-64951:
Cryo-EM structure of Shewanella putrefaciens ComEC in complex with ssDNA
Method: single particle / : Hirano H, Nureki O

EMDB-64953:
Cryo-EM structure of Shewanella putrefaciens ComEC in complex with dsDNA
Method: single particle / : Hirano H, Nureki O

PDB-9vc6:
Cryo-EM structure of Bacillus halodurans ComEC
Method: single particle / : Hirano H, Nureki O

PDB-9vc9:
Cryo-EM structure of Shewanella decolorationis ComEC
Method: single particle / : Hirano H, Nureki O

PDB-9vcb:
Cryo-EM structure of Shewanella putrefaciens ComEC in complex with ssDNA
Method: single particle / : Hirano H, Nureki O

PDB-9vcf:
Cryo-EM structure of Shewanella putrefaciens ComEC in complex with dsDNA
Method: single particle / : Hirano H, Nureki O

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more