[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,632 items for (author: shi & th)

EMDB-46602:
CryoEM structure of anti-MHC-I Fab B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

PDB-9d74:
CryoEM structure of anti-MHC-I Fab B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

EMDB-49520:
Focused refinement of the prefusion F glycoprotein ectodomain of Nipah virus in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-46600:
CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

EMDB-46601:
CryoEM structure of anti-MHC-I mAb B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Lei H, Huang R, Margulies DH

EMDB-70276:
CryoEM structure of anti-MHC-I mAb B1.23.2 Fc domains
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Huang R

PDB-9d72:
CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

PDB-9d73:
CryoEM structure of anti-MHC-I mAb B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Lei H, Huang R, Margulies DH

PDB-9oa9:
CryoEM structure of anti-MHC-I mAb B1.23.2 Fc domains
Method: single particle / : Jiang J, Natarajan K, Margulies DH

EMDB-74075:
Pseudomonas phage DEV delta-gp53 mutant neck and tail (portal, head-to-tail and tail tube proteins)
Method: single particle / : Bellis NF, Cingolani G

EMDB-74091:
Asymmetric Tail Gating Complex of Pseudomonas Phage DEV
Method: single particle / : Bellis NF, Cingolani G

PDB-9zdw:
Pseudomonas phage DEV delta-gp53 mutant neck and tail (portal, head-to-tail and tail tube proteins)
Method: single particle / : Bellis NF, Cingolani G

PDB-9ze4:
Asymmetric Tail Gating Complex of Pseudomonas Phage DEV
Method: single particle / : Bellis NF, Cingolani G

EMDB-54112:
CryoEM structure of the microtubule-AKAP13 C1 domain complex
Method: single particle / : Giono M, Choi SR, Filipcik P, Steinmetz MO

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-63560:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

PDB-9m0p:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

EMDB-71643:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

EMDB-71644:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

PDB-9pha:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

PDB-9phb:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

EMDB-45440:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

PDB-9cca:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

EMDB-63444:
Zebrafish ovum lysosomal peptide:N-glycanase
Method: single particle / : Honda A, Kamada K, Burton-Smith RN, Murata K, Suzuki T

PDB-9lwg:
Zebrafish ovum lysosomal peptide:N-glycanase
Method: single particle / : Honda A, Kamada K, Burton-Smith RN, Murata K, Suzuki T

EMDB-48421:
Band 3 OF/IF1
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-48422:
Band 3 OF/OF
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-48480:
Band 3 IF1/IF2
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mnd:
Band 3 OF/IF1
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mng:
Band 3 OF/OF
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mos:
Band 3 IF1/IF2
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-62660:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62661:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-183
Method: single particle / : Qiu YN, Sun L

EMDB-62680:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62687:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62691:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62729:
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62731:
Focused refinement up-RBD1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62733:
Focused refinement up-RBD2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62734:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62744:
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62745:
Focused refinement trimer1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62746:
Focused refinement trimer2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62777:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

PDB-9kzd:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

PDB-9kze:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-183
Method: single particle / : Qiu YN, Sun L

PDB-9kzz:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

PDB-9l05:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

PDB-9l07:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more