[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: riley & d)

EMDB-46526:
Nonactive state of Gly-,Glu- bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-46527:
Open state of Gly-,Glu-,EU1622-240 bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-46528:
Gly-,PPDA- bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-46529:
Nonactive state of Gly-,Glu- bound GluN1a-2B-2D NMDAR (Low-res)
Method: single particle / : Hyunook K, Hiro F

EMDB-46530:
Gly-,Glu-,(S)-DQP-997-74 bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-46531:
Gly-,Glu-,(S)-(+)-ketamine bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

PDB-9d37:
Nonactive state of Gly-,Glu- bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

PDB-9d38:
Open state of Gly-,Glu-,EU1622-240 bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

PDB-9d39:
Gly-,PPDA- bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

PDB-9d3a:
Nonactive state of Gly-,Glu- bound GluN1a-2B-2D NMDAR (Low-res)
Method: single particle / : Hyunook K, Hiro F

PDB-9d3b:
Gly-,Glu-,(S)-DQP-997-74 bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

PDB-9d3c:
Gly-,Glu-,(S)-(+)-ketamine bound GluN1a-2B-2D NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-47333:
CryoEM structure of the human antibodies PIV3HN-05 and PIV3HN-13 in complex with the parainfluenza virus hemagglutinin-neuraminidase protein
Method: single particle / : Mousa JJ, Miller RJ

PDB-9dzq:
CryoEM structure of the human antibodies PIV3HN-05 and PIV3HN-13 in complex with the parainfluenza virus hemagglutinin-neuraminidase protein
Method: single particle / : Mousa JJ, Miller RJ

EMDB-27641:
The structure of the interleukin 11 signalling complex, truncated gp130
Method: single particle / : Metcalfe RD, Hanssen E, Griffin MDW

EMDB-27642:
The structure of the IL-11 signalling complex, with full-length extracellular gp130
Method: single particle / : Metcalfe RD, Hanssen E, Griffin MDW

PDB-8dps:
The structure of the interleukin 11 signalling complex, truncated gp130
Method: single particle / : Metcalfe RD, Hanssen E, Griffin MDW

PDB-8dpt:
The structure of the IL-11 signalling complex, with full-length extracellular gp130
Method: single particle / : Metcalfe RD, Hanssen E, Griffin MDW

EMDB-28949:
Leucine-rich repeat kinase 1 monomer, global refinement
Method: single particle / : Metcalfe RD, Martinez Fiesco JA, Zhang P

EMDB-28950:
Structure of the leucine-rich repeat kinase 1 monomer
Method: single particle / : Metcalfe RD, Martinez Fiesco JA, Zhang P

EMDB-28951:
Leucine-rich repeat kinase 1 monomer, focused refinement on C-terminal region
Method: single particle / : Metcalfe RD, Martinez Fiesco JA, Zhang P

EMDB-28952:
Cryo-EM map of the LRRK1 dimer
Method: single particle / : Metcalfe RD, Martinez Fiesco JA, Zhang P

PDB-8fac:
Structure of the leucine-rich repeat kinase 1 monomer
Method: single particle / : Metcalfe RD, Martinez Fiesco JA, Zhang P

EMDB-16963:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

PDB-8olu:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

EMDB-27936:
Cryo-EM structure of Apo form ME3
Method: single particle / : Yu X, Grell TAJ, Shaffer PL, Steele R, Sharma S, Thompson AA, Tresadern G, Ortiz-Meoz RF, Mason M, Gomez-Tamayo JC, Riley D, Wagner MV, Wadia J

EMDB-27937:
Cryo-EM structure of human ME3 in the presence of citrate
Method: single particle / : Yu X, Grell TAJ, Shaffer PL, Steele R, Sharma S, Thompson AA, Tresadern G, Ortiz-Meoz RF, Mason M, Gomez-Tamayo JC, Riley D, Wagner MV, Wadia J

EMDB-27945:
Cryo-EM structure of human ME3 in the presence of citrate
Method: single particle / : Yu X, Grell TAJ, Shaffer PL, Steele R, Sharma S, Thompson AA, Tresadern G, Ortiz-Meoz RF, Mason M, Gomez-Tamayo JC, Riley D, Wagner MV, Wadia J

PDB-8e76:
Cryo-EM structure of Apo form ME3
Method: single particle / : Yu X, Grell TAJ, Shaffer PL, Steele R, Sharma S, Thompson AA, Tresadern G, Ortiz-Meoz RF, Mason M, Gomez-Tamayo JC, Riley D, Wagner MV, Wadia J

PDB-8e78:
Cryo-EM structure of human ME3 in the presence of citrate
Method: single particle / : Yu X, Grell TAJ, Shaffer PL, Steele R, Sharma S, Thompson AA, Tresadern G, Ortiz-Meoz RF, Mason M, Gomez-Tamayo JC, Riley D, Wagner MV, Wadia J

PDB-8e8o:
Cryo-EM structure of human ME3 in the presence of citrate
Method: single particle / : Yu X, Grell TAJ, Shaffer PL, Steele R, Sharma S, Thompson AA, Tresadern G, Ortiz-Meoz RF, Mason M, Gomez-Tamayo JC, Riley D, Wagner MV, Wadia J

EMDB-23574:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib.
Method: single particle / : Liu B, Hanssen E, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23575:
Structure of Plasmodium falciparum 20S proteasome with bound ML052.
Method: single particle / : Hanssen E, Liu B, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23576:
Structure of human 20S proteasome with bound ML052.
Method: single particle / : Hanssen E, Xie SC, Liu B, Leis AP, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

PDB-7lxt:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib
Method: single particle / : Morton CJ, Metcalfe RD, Liu B, Xie SC, Hanssen E, Leis AP, Tilley L, Griffin MDW

PDB-7lxu:
Structure of Plasmodium falciparum 20S proteasome with bound MPI-5
Method: single particle / : Metcalfe RD, Morton CJ, Xie SC, Liu B, Hanssen E, Leis AP, Tilley L, Griffin MDW

PDB-7lxv:
Structure of human 20S proteasome with bound MPI-5
Method: single particle / : Metcalfe RD, Morton CJ, Liu B, Xie SC, Hanssen E, Leis AP, Tilley L, Griffin MDW

EMDB-20073:
Reconstruction of the Plasmodium falciparum 20S proteasome in complex with one PA28 activator prepared without chemical stabilisation
Method: single particle / : Hanssen E, Xie SC, Leis A, Metcalfe RD, Gillett DL, Tilley L, Griffin MDW

EMDB-9257:
The structure of the Plasmodium falciparum 20S proteasome in complex with two PA28 activators.
Method: single particle / : Hanssen E, Xie SC, Leis A, Metcalfe RD, Gillett DL, Tilley L, Griffin MDW

EMDB-9258:
The structure of the Plasmodium falciparum 20S proteasome.
Method: single particle / : Hanssen E, Xie SC, Leis A, Metcalfe RD, Gillett DL, Tilley L, Griffin MDW

EMDB-9259:
The structure of the Plasmodium falciparum 20S proteasome in complex with one PA28 activator.
Method: single particle / : Hanssen E, Xie SC, Leis A, Metcalfe RD, Gillett DL, Tilley L, Griffin MDW

PDB-6muv:
The structure of the Plasmodium falciparum 20S proteasome in complex with two PA28 activators
Method: single particle / : Metcalfe RD, Xie SC, Hanssen E, Gillett DL, Leis AP, Tilley L, Griffin MDW

PDB-6muw:
The structure of the Plasmodium falciparum 20S proteasome.
Method: single particle / : Metcalfe RD, Xie SC, Hanssen E, Gillett DL, Leis AP, Tilley L, Griffin MDW

PDB-6mux:
The structure of the Plasmodium falciparum 20S proteasome in complex with one PA28 activator
Method: single particle / : Metcalfe RD, Xie SC, Hanssen E, Gillett DL, Leis AP, Tilley L, Griffin MDW

EMDB-4590:
Leishmania tarentolae proteasome 20S subunit complexed with GSK3494245
Method: single particle / : Rowland P, Goswami P

EMDB-4591:
Leishmania tarentolae proteasome 20S subunit apo structure
Method: single particle / : Goswami P, Rowland P

PDB-6qm7:
Leishmania tarentolae proteasome 20S subunit complexed with GSK3494245
Method: single particle / : Rowland P, Goswami P

PDB-6qm8:
Leishmania tarentolae proteasome 20S subunit apo structure
Method: single particle / : Rowland P, Goswami P

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more