[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,660 items for (author: ray & s)

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-70791:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

PDB-9os2:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

EMDB-47886:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, consensus map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47887:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, CARF domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47888:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, deaminase domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47890:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-48116:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9ebt:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9eka:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-63444:
Zebrafish ovum lysosomal peptide:N-glycanase
Method: single particle / : Honda A, Kamada K, Burton-Smith RN, Murata K, Suzuki T

PDB-9lwg:
Zebrafish ovum lysosomal peptide:N-glycanase
Method: single particle / : Honda A, Kamada K, Burton-Smith RN, Murata K, Suzuki T

EMDB-64895:
Ushikuvirus (9.3A cryo-EM map)
Method: single particle / : Burton-Smith RN, Murata K

EMDB-70867:
DDB1-CRBN with Ikaros(ZF2) and DEG-47: composite map and model submission
Method: single particle / : Rizvi Z, Lander GC

PDB-9ouk:
DDB1-CRBN with Ikaros(ZF2) and DEG-47: composite map and model submission
Method: single particle / : Rizvi Z, Lander GC

EMDB-73233:
Tra1 and core modules including core tip of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73234:
Tra1 and Core Module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73235:
Histone Acetyl Transferase (HAT) module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73236:
Tra1, Core and minimal HAT modules of ctSAGA, composite.
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73237:
Focused map of HAT module Bromodomain region
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73238:
Focused map of Tra1 module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73239:
Focused map of Tra1 module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73240:
Focused map of Tra1 module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73241:
Focused map of core module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73242:
Focused map of core module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Kornberg RD

EMDB-73243:
Focused map of core module of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73261:
Tra1 module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-73269:
Core module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

PDB-9ynu:
Tra1 and core modules including core tip of ctSAGA complex
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

PDB-9ynv:
Histone Acetyl Transferase (HAT) module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

PDB-9ynw:
Tra1, Core and minimal HAT modules of ctSAGA, composite.
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

PDB-9yol:
Tra1 module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

PDB-9yoq:
Core module of ctSAGA
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

PDB-9yzy:
ctSAGA Focused on HAT Bromodomain region
Method: single particle / : Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

EMDB-70644:
Consensus map of open state Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70645:
ECD focused map of open state Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70646:
TMD focused refined open state Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70647:
Consensus map of Closed state Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70648:
TMD focus refined Closed state Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70649:
ECD focus refined map of Closed state Gly/Glu/24S-HC bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70650:
Consensus map of Non-active state Gly/Glu/PS bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70651:
ECD focus refined map of Non-active state Gly/Glu/PS bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70652:
TMD focus refined map of Non-active state Gly/Glu/PS bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70653:
Consensus map of pre-active state Gly/Glu/PS bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70654:
ECD focus refined map of preactive state Gly/Glu/PS bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-70655:
TMD focus refined map of preactive state Gly/Glu/PS bound hGluN1a-2B NMDAR
Method: single particle / : Hyunook K, Hiro F

EMDB-52853:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more