[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 406 items for (author: ouch & c)

EMDB-55084:
Native N.meningitidis PorB bound to the N-terminal domain of rmpM
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-75268:
Native flagellar filament from Leptospira interrogans
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

EMDB-75269:
Native flagellar filament from Leptospira interrogans flaB1- KO mutant strain
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

EMDB-75270:
Native flagellar filament from Leptospira biflexa
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

PDB-10lk:
Native flagellar filament from Leptospira interrogans
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

PDB-10ll:
Native flagellar filament from Leptospira interrogans flaB1- KO mutant strain
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

PDB-10lm:
Native flagellar filament from Leptospira biflexa
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

EMDB-54884:
Native Neisseria meninigitidis PilQ, Gate Domain focused map
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-54885:
Native Neisseria meningitidis PilQ, N0-domain focused map
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-54886:
Neisseria meningitidis Native PilQ protomer, composite map
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-54887:
Neisseria meningitidis Native PilQ tetradecamer
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-58124:
In situ subtomogram average of a ribosome bound to ribosome associated vesicle in primary neurons expressing KDEL tagged with mNeonGreen (mNeon-KDEL)
Method: subtomogram averaging / : Carter SD, Jensen GJ, Freyberg Z

EMDB-53876:
Influenza A/H7N9 polymerase in complex with a 70-mer template in stalled elongation with backtracking and stem.
Method: single particle / : Arragain B, Cusack S

EMDB-53877:
Influenza A/H7N9 polymerase in complex with a 70-mer RNA template, in stalled elongation.
Method: single particle / : Arragain B, Cusack S

PDB-9raf:
Influenza A/H7N9 polymerase in complex with a 70-mer template in stalled elongation with backtracking and stem.
Method: single particle / : Arragain B, Cusack S

PDB-9rag:
Influenza A/H7N9 polymerase in complex with a 70-mer RNA template, in stalled elongation.
Method: single particle / : Arragain B, Cusack S

EMDB-62872:
Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 1)
Method: single particle / : Ouchi R, Numata T

EMDB-62873:
Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 2)
Method: single particle / : Ouchi R, Numata T

PDB-9l7c:
Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 1)
Method: single particle / : Ouchi R, Numata T

PDB-9l7d:
Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 2)
Method: single particle / : Ouchi R, Numata T

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pni:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

PDB-9pnn:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pnu:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq2:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq3:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-52521:
Agrobacterium phage 7-7-1 tail
Method: single particle / : Noteborn WEM, Hoeksma T, Rouchen OY, Briegel A

EMDB-52522:
Agrobacterium phage 7-7-1 capsid
Method: single particle / : Noteborn WEM, Hoeksma T, Rouchen OY, Briegel A

EMDB-53352:
Cryo-tomogram of Agrobacterium phage 7-7-1 and Agrobacterium sp. H13-3
Method: electron tomography / : Noteborn WEM, Hoeksma T, Rouchen OY, Briegel A

PDB-9hz7:
Agrobacterium phage 7-7-1 tail
Method: single particle / : Noteborn WEM, Hoeksma T, Rouchen OY, Briegel A

PDB-9hz8:
Agrobacterium phage 7-7-1 capsid
Method: single particle / : Noteborn WEM, Hoeksma T, Rouchen OY, Briegel A

EMDB-66856:
Omicron-specific ultra-potent SARS-CoV-2 neutralizing antibodies targeting the N1/N2 loop of Spike N-terminal domain
Method: single particle / : Li ZQ, Niu X

PDB-9xgo:
Omicron-specific ultra-potent SARS-CoV-2 neutralizing antibodies targeting the N1/N2 loop of Spike N-terminal domain
Method: single particle / : Li ZQ, Niu X

EMDB-51027:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 dimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51028:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 trimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51029:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 tetramer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-54200:
Complex of peptidisc-embedded alpha5beta1 integrin and galectin-3
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51894:
Auxin transporter-like protein 3 (LAX3) in the inward occluded state in complex with auxin (Indole-3-acetic acid, IAA)
Method: single particle / : Ung KL, Andersen CG, Stokes DL, Pedersen BP

EMDB-51895:
Auxin transporter-like protein 3 (LAX3) in the inward occluded state in complex with 2,4-Dichlorophenoxyacetic acid (2,4-D)
Method: single particle / : Ung KL, Amsinck BL, Andersen CG, Stokes DL, Pedersen BP

EMDB-51896:
Auxin transporter-like protein 3 (LAX3) in the fully occluded state in complex with 2-naphthoxyacetic acid (2-NOA)
Method: single particle / : Ung KL, Andersen CG, Stokes DL, Pedersen BP

EMDB-53308:
Auxin transporter-like protein 3 (LAX3) in the inward open state, apo
Method: single particle / : Amsinck BL, Ung KL, Stokes DL, Pedersen BP

PDB-9h61:
Auxin transporter-like protein 3 (LAX3) in the inward occluded state in complex with auxin (Indole-3-acetic acid, IAA)
Method: single particle / : Ung KL, Andersen CG, Stokes DL, Pedersen BP

PDB-9h62:
Auxin transporter-like protein 3 (LAX3) in the inward occluded state in complex with 2,4-Dichlorophenoxyacetic acid (2,4-D)
Method: single particle / : Ung KL, Amsinck BL, Andersen CG, Stokes DL, Pedersen BP

PDB-9h63:
Auxin transporter-like protein 3 (LAX3) in the fully occluded state in complex with 2-naphthoxyacetic acid (2-NOA)
Method: single particle / : Ung KL, Andersen CG, Stokes DL, Pedersen BP

PDB-9qqm:
Auxin transporter-like protein 3 (LAX3) in the inward open state, apo
Method: single particle / : Amsinck BL, Ung KL, Stokes DL, Pedersen BP

EMDB-63235:
An antibody target the fusion protein of Nipah virus
Method: single particle / : Xu H, Su XD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more