[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 917 items for (author: oda & k)

EMDB-63852:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

PDB-9u4o:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

EMDB-69590:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

PDB-24kr:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

EMDB-73343:
Cryo-EM structure of the VPS13C N-terminal region in complex with Calmodulin
Method: single particle / : Li D, Reinisch KM

EMDB-73344:
Cryo-EM structure of the VPS13C C-terminal region
Method: single particle / : Li D, Reinisch KM

EMDB-73373:
Full-length human VPS13C in complex with calmodulin from the CryoEM composite map
Method: single particle / : Li D, Reinisch KM

PDB-9yqp:
Cryo-EM structure of the VPS13C N-terminal region in complex with Calmodulin
Method: single particle / : Li D, Reinisch KM

PDB-9yqq:
Cryo-EM structure of the VPS13C C-terminal region
Method: single particle / : Li D, Reinisch KM

PDB-9yrm:
CryoEM Structure of VPS13 protein, 1-1390 from C. thermophilum, in complex with calmodulin
Method: single particle / : Li D, Reinisch KM

PDB-9yrp:
Full-length human VPS13C in complex with calmodulin from the CryoEM composite map
Method: single particle / : Li D, Reinisch KM

EMDB-64974:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT Consensus map
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64975:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_TM_Local Refinment
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-64976:
Cryo-EM structure of the aspartate:alanine antiporter AspT WT_SD_Local refinement
Method: single particle / : Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S

EMDB-71616:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

PDB-9pfz:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

EMDB-52712:
Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
Method: single particle / : Novotna M, Boissier F, Balikova Novotna G, Innis CA

EMDB-52711:
Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
Method: single particle / : Novotna M, Boissier F, Balikova Novotna G, Innis CA

EMDB-64999:
The cryo-EM structure of human Piezo2-MDFIC2 complex (consensus map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65000:
The cryo-EM structure of human Piezo2-MDFIC2 complex (cap focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65001:
The cryo-EM structure of human Piezo2-MDFIC2 complex (blade focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65002:
The cryo-EM structure of human Piezo2-MDFIC complex (consensus map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65003:
The cryo-EM structure of human Piezo2-MDFIC complex (cap focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65004:
The cryo-EM structure of human Piezo2-MDFIC complex (blade focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

PDB-9ved:
The cryo-EM structure of mouse Piezo1-MDFI complex
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

PDB-9vee:
The cryo-EM structure of human Piezo2-MDFIC2 complex (composite map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

PDB-9vef:
The cryo-EM structure of human Piezo2-MDFIC complex (composite map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

EMDB-71358:
NTSR1-Gi-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71359:
NTSR1-Gi-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71360:
NTSR1-Gi-NTS(8-13) Complex in the Canonical, AHD Closed State (C-Closed-Apo)
Method: single particle / : Robertson MJ

EMDB-71361:
NTSR1-Gi-NTS(8-13), GTP-bound Complex in the Canonical, AHD Open State (C-Open-GTP)
Method: single particle / : Robertson MJ

EMDB-71362:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State (C-Closed-GTP)
Method: single particle / : Robertson MJ

EMDB-71363:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Open State (NC-Open-GTP)
Method: single particle / : Robertson MJ

EMDB-71364:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Closed State (NC-Closed-GTP)
Method: single particle / : Robertson MJ

EMDB-71365:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State, 3DVA Sorted (C-Closed*-GTP)
Method: single particle / : Robertson MJ

EMDB-71366:
NTSR1-G11-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71367:
NTSR1-G11-NTS(8-13) Complex in the Canonical, AHD Partially Closed State (C-P-Closed-Apo)
Method: single particle / : Robertson MJ

EMDB-71368:
NTSR1-G11-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Method: single particle / : Robertson MJ

EMDB-71369:
NTSR1-G11-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State 3DVA Separated 1 (C-Closed-GTP)
Method: single particle / : Robertson MJ

EMDB-71370:
NTSR1-G11-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State 3DVA Separated 2 (C-Closed*-GTP)
Method: single particle / : Robertson MJ

EMDB-74080:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State (C-Closed-GTP), MSP1D1 Nanodisc
Method: single particle / : Robertson MJ

EMDB-74081:
NTSR1-Gi-NTS(8-13), GTP-bound Complex in the Canonical, AHD Open State (C-Open-GTP), MSP1D1
Method: single particle / : Robertson MJ

PDB-9p7z:
NTSR1-Gi-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Method: single particle / : Robertson MJ

PDB-9p80:
NTSR1-Gi-NTS(8-13) Complex in the Non-Canonical, AHD Open State (NC-Open-Apo)
Method: single particle / : Robertson MJ

PDB-9p81:
NTSR1-Gi-NTS(8-13), GTP-bound Complex in the Canonical, AHD Open State (C-Open-GTP)
Method: single particle / : Robertson MJ

PDB-9p82:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State (C-Closed-GTP)
Method: single particle / : Robertson MJ

PDB-9p83:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Open State (NC-Open-GTP)
Method: single particle / : Robertson MJ

PDB-9p84:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Non-Canonical, AHD Closed State (NC-Closed-GTP)
Method: single particle / : Robertson MJ

PDB-9p85:
NTSR1-Gi-NTS(8-13) GTP-Bound Complex in the Canonical, AHD Closed State, 3DVA Sorted (C-Closed*-GTP)
Method: single particle / : Robertson MJ

PDB-9p86:
NTSR1-G11-NTS(8-13) Complex in the Canonical, AHD Open State (C-Open-Apo)
Method: single particle / : Robertson MJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more