[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 119 items for (author: muyuan & c)

EMDB-75011:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

PDB-9zzo:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Method: single particle / : Han J, Chen M, Che T

EMDB-49886:
Cryo-ET map of the VZV capsid 3-fold axis.
Method: subtomogram averaging / : Oliver SL, Chen M

EMDB-49465:
Reconstruction of the intranuclear varicella-zoster virus capsid.
Method: subtomogram averaging / : Oliver SL

EMDB-49466:
Reconstruction of the varicella-zoster virus capsid vertex.
Method: subtomogram averaging / : Olver SL

EMDB-49467:
Reconstruction of the intracellular varicella-zoster virus capsid with portal.
Method: subtomogram averaging / : Oliver SL

EMDB-49468:
VZV portal vertex cryo-ET reconstruction.
Method: subtomogram averaging / : Oliver SL

EMDB-49469:
VZV portal cryo-ET reconstruction.
Method: subtomogram averaging / : Oliver SL

EMDB-49470:
Reconstruction of intracellular varicella zoster virus CAI-capsid with portal.
Method: subtomogram averaging / : Oliver SL

EMDB-49471:
Reconstruction of the portal vertex from intracellular varicella-zoster virus CAI-capsids.
Method: subtomogram averaging / : Oliver SL

EMDB-49472:
Reconstruction of the varicella-zoster virus C-capsid with the portal vertex.
Method: subtomogram averaging / : Oliver SL

EMDB-49473:
VZV C-capsid portal vertex.
Method: subtomogram averaging / : Oliver SL

EMDB-49591:
Cryo-ET map of the VZV capsid vertex (5-fold axis).
Method: subtomogram averaging / : Oliver SL, Chen M

PDB-9no1:
Cryo-ET map of the VZV capsid vertex (5-fold axis).
Method: subtomogram averaging / : Oliver SL, Chen M

EMDB-71445:
Antibody (1B2) Bound Rifamycin Synthetase Module 1 in the Transacylation Mode
Method: single particle / : Cogan DP, Liu C, West RC, Chen M

EMDB-71446:
Antibody (1B2) Bound Rifamycin Synthetase Module 1 in the Elongation Mode
Method: single particle / : Cogan DP, Liu C, West RC, Chen M

EMDB-71497:
Antibody (1B2) Bound Crosslinked Rifamycin Synthetase Module 1 with a C-terminal Type II Thioesterase
Method: single particle / : Cogan DP, Liu C, West RC, Chen M

PDB-9pat:
Antibody (1B2) Bound Rifamycin Synthetase Module 1 in the Transacylation Mode
Method: single particle / : Cogan DP, Liu C, West RC, Chen M

PDB-9pav:
Antibody (1B2) Bound Rifamycin Synthetase Module 1 in the Elongation Mode
Method: single particle / : Cogan DP, Liu C, West RC, Chen M

PDB-9pc6:
Antibody (1B2) Bound Crosslinked Rifamycin Synthetase Module 1 with a C-terminal Type II Thioesterase
Method: single particle / : Cogan DP, Liu C, West RC, Chen M

PDB-9ogk:
Refinement of PDB-3J5R against EMD-8117 using EMAN2
Method: single particle / : Chen M

EMDB-41495:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: cis-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41496:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: trans-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tpw:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: cis-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tpx:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 3 in complex with antibody fragment 1B2: trans-oriented 1B2 and ACP
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41355:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its translocation ACP partner of Module 2
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tko:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its translocation ACP partner of Module 2
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41305:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41306:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked Intra-State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41307:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its elongation ACP partner
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjn:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjo:
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked Intra-State 1
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

PDB-8tjp:
KS-AT core of 6-deoxyerythronolide B synthase (DEBS) Module 3 crosslinked with its elongation ACP partner
Method: single particle / : Cogan DP, Soohoo AM, Chen M, Brodsky KL, Liu Y, Khosla C

EMDB-41637:
Asymmetric cryoEM reconstruction of Mayaro virus
Method: single particle / : Chmielewski D, Kaelber J, Jin J, Weaver S, Auguste AJ, Chiu W

EMDB-28979:
Cryo-EM structure of Chikungunya virus asymmetric unit
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-41096:
Cryo-electron tomography of Chikungunya virus pentamer structure
Method: subtomogram averaging / : Chmielewsk D, Su GC, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-41631:
Cryo-EM structure of Chikungunya virus with asymmetric reconstruction
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

PDB-8fcg:
Cryo-EM structure of Chikungunya virus asymmetric unit
Method: single particle / : Su GC, Chmielewsk D, Kaelber J, Pintilie G, Chen M, Jin J, Auguste A, Chiu W

EMDB-41812:
Subtomogram Averaging of the Triplet from Mouse Centrioles
Method: subtomogram averaging / : Zhang Z, Moye A, He F, Chen M, Agosto AA, Wensel TG

EMDB-41813:
Subtomogram averaging of doublets with Y-links
Method: subtomogram averaging / : Zhang Z, Moye A, He F, Chen M, Agosto AA, Wensel TG

EMDB-41814:
Subtomogram averaging of ciliary beads from ciliary membrane
Method: subtomogram averaging / : Zhang Z, Moye A, He F, Chen M, Agosto AA, Wensel TG

EMDB-42250:
Varicella-zoster virus glycoprotein B; H527P prefusion class I.
Method: subtomogram averaging / : Zhou M, Oliver SL, Muyuan C, Vollmer B

EMDB-42251:
Varicella-zoster virus glycoprotein B; H527P prefusion mutant class II.
Method: subtomogram averaging / : Zhou M, Oliver SL, Muyuan C, Vollmer B

EMDB-29696:
In situ structure of GspD-beta-GspS complex on the bacterial outer membrane
Method: subtomogram averaging / : Yu Z, Chen M, Ludtke SJ, Wang Z

EMDB-29697:
In situ structure of GspD-beta-GspS complex on the bacterial outer membrane when GspD-beta is overexpressed solely
Method: subtomogram averaging / : Yu Z, Chen M, Ludtke SJ, Wang Z

EMDB-29698:
In situ structure of GspD-beta on the bacterial inner membrane
Method: subtomogram averaging / : Yu Z, Chen M, Ludtke SJ, Wang Z

EMDB-29702:
In situ structure of GspD-alpha on the bacterial inner membrane
Method: subtomogram averaging / : Yu Z, Chen M, Ludtke SJ, Wang Z

EMDB-29703:
In situ structure of GspD-alpha on the bacterial outer membrane
Method: subtomogram averaging / : Yu Z, Chen M, Ludtke SJ, Wang Z

EMDB-41840:
Gaussian Mixture Models based single particle refinement - GPCR (Substance P bound to active human neurokinin 1 receptor in complex with miniGs399 from EMPIAR-10786)
Method: single particle / : Chen M

EMDB-41841:
Gaussian mixture model based single particle refinement - SARS (SARS-CoV-2 Spike Proteins on intact virions from EMPIAR-10492)
Method: single particle / : Chen M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more