[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 139 items for (author: miles & la)

EMDB-48183:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48184:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48185:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48186:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48187:
Antibody fragments from mAb21 and mAb475 bound to the fimbrial tip protein, FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-71842:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me4:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me5:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me6:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me7:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9ptm:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-44103:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46804:
PDCoV S trimer bound by three copies of PD41 Fab
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46805:
PDCoV S RBD bound to PD41 Fab (local refinement)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9b2c:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9dez:
PDCoV S trimer bound by three copies of PD41 Fab
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9df0:
PDCoV S RBD bound to PD41 Fab (local refinement)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-17295:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '3 up' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

PDB-8oyt:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '3 up' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

EMDB-17296:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

PDB-8oyu:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

EMDB-42944:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

PDB-8gel:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

PDB-8tl7:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

PDB-8v2d:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

PDB-8v3b:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

EMDB-41986:
Human retinal variant phosphomimetic IMPDH1(595)-S477D free octamer bound by GTP, ATP, IMP, and NAD+
Method: single particle / : Calise SJ, Kollman JM

EMDB-41989:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42012:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42026:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42029:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u7m:
Human retinal variant phosphomimetic IMPDH1(595)-S477D free octamer bound by GTP, ATP, IMP, and NAD+
Method: single particle / : Calise SJ, Kollman JM

PDB-8u7q:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u7v:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u8o:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u8y:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-16963:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

PDB-8olu:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

EMDB-29915:
CryoEM map of a de novo designed octahedral nanocage with programmable volume; design cage_O4_34
Method: single particle / : Kibler RD, Borst AJ

EMDB-40070:
Cryo-EM map of synthetic cage_O3_10 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more