[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,265 items for (author: mi & cc)

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-70517:
Anthoceros agrestis Rubisco (8 RbcL and 8 RbcS1) head to head stacking.
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-70520:
A. agrestis Rubisco (8 RbcL 7 RbcS 1 RbcS-STAR)
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-75697:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation bound to C77G12 (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11hn:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation bound to C77G12 (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-62786:
Cryo-EM structure of SARS-CoV-2 BA.2.75 Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-62788:
Cryo-EM structure of SARS-CoV-2 PT Spike Protein complex with a potent broad-spectrum macrocyclic peptide inhibitor 6L3-3P11K
Method: single particle / : Wang M, Yang JY, Peng Q, Shi Y

EMDB-67440:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with macrocyclic peptide 6L3 (All RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67548:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein complex with a macrocyclic peptide 6L3-3P11K (Two RBDs up)
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67549:
Cryo-EM map of SARS-CoV-2 PT Spike Protein,Three RBDs down
Method: single particle / : Wang M, Peng Q, Yang JY, Shi Y

EMDB-67568:
Cryo-EM map of SARS-CoV-2 BA.2.75 Spike Protein (Three RBDs down)
Method: single particle / : Wang M, Peng Q, Yang JY, Luo H, Shi Y

EMDB-55442:
mouse hippocampal CA1-sr synapse tomogram: CA1-sr dataset 2
Method: electron tomography / : Glynn C, Smith JLR

EMDB-72314:
ABCE1-eRF1-RNC-AMD1C
Method: single particle / : Maldosevic E, Jomaa A

EMDB-63404:
PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-63405:
PSI-4 LHCI dimer supercomplex from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

PDB-9lut:
PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

PDB-9luu:
PSI-4 LHCI dimer supercomplex from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-47768:
Cryo-EM structure of human TWIK-2 at pH 7.5
Method: single particle / : Ma Q, Kumar A, Navratna V, Mosalaganti S

EMDB-71459:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71460:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71461:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-RC_I_1 in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71462:
Negative stain EM map of polyclonal serum from mouse immunized with H5 TX24-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71463:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71464:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71465:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-foldon in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71466:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71467:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71468:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71469:
Negative stain EM map 4 of polyclonal serum from mouse immunized with H5 TX24-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71470:
Negative stain EM map 1 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71471:
Negative stain EM map 2 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71472:
Negative stain EM map 3 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-71473:
Negative stain EM map 4 of polyclonal serum from mouse immunized with H5 TX24-FMLMI-membrane anchored in complex with TX24-I53_dn5B.
Method: single particle / : Dosey A, King NP

EMDB-70676:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

PDB-9oox:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-52566:
Local Refinement of human M4 muscarinic acetylcholine receptor G protein complex bound to selective PAM Emraclidine
Method: single particle / : Trabuco M, Sawicka M, Botte M, Vacca S

EMDB-70159:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

PDB-9o65:
Cryo-EM structure of SHOC2-KRAS-PP1CA (SKP) complex
Method: single particle / : Finci LI, Bonsor DA, Simanshu DK

EMDB-63452:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

PDB-9lwo:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

EMDB-70449:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

EMDB-70450:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

PDB-9og1:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

PDB-9og2:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more