[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,073 items for (author: mark & a)

EMDB-57068:
Cryo-EM structure of human DHX9 in complex with ATX-968 and ADP.
Method: single particle / : Hallett ST, Silva STN, Le Bihan Y, Van Montfort R

PDB-29by:
Cryo-EM structure of human DHX9 in complex with ATX-968 and ADP.
Method: single particle / : Hallett ST, Silva STN, Le Bihan Y, Van Montfort R

EMDB-70042:
Human replisome map 1
Method: single particle / : Steinruecke F, Markert J, Farnung L

EMDB-70043:
Replisome map A
Method: single particle / : Steinruecke F, Markert J, Farnung L

EMDB-70044:
MCM C-tier map B
Method: single particle / : Steinruecke F, Markert J, Farnung L

EMDB-70045:
TIMELESS-TIPIN map C
Method: single particle / : Steinruecke F, Markert J, Farnung L

EMDB-70046:
AND-1 map D
Method: single particle / : Steinruecke F, Markert J, Farnung L

EMDB-70068:
Replisome (map E)
Method: single particle / : Steinruecke F, Markert J, Farnung L

PDB-9o34:
Replisome (map E)
Method: single particle / : Steinruecke F, Markert J, Farnung L

EMDB-74471:
Structure of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74472:
Raw consensus map of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74473:
Constituent EM map: Focused refinement on NTD/SPRY/Calstabin-1 of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74474:
Constituent EM map: Focused refinement on JSol/CSol of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74477:
Constituent EM map: Focused refinement on BSol of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74478:
Constituent EM map: Focused refinement on TaF/TMD/CTD of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74479:
Constituent EM map: Focused refinement on Ry12 of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74480:
Constituent EM map: Focused refinement on Ry34 of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74482:
Constituent EM map: Focused refinement on TMx region of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74484:
Raw consensus map of RyR1 in presence of rosuvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74486:
Structure of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74487:
Raw consensus map of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74488:
Constituent EM map: Focused refinement on NTD/SPRY/Calstabin-1 of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74489:
Constituent EM map: Focused refinement on JSol/CSol of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74491:
Constituent EM map: Focused refinement on BSol of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74492:
Constituent EM map: Focused refinement on TaF/TMD/CTD of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74493:
Constituent EM map: Focused refinement on Ry12 of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74494:
Constituent EM map: Focused refinement on Ry34 of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74495:
Constituent EM map: Focused refinement on TMx region of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

PDB-9zo8:
Structure of RyR1 in presence of rosuvastatin (including auxiliary transmembrane helices TMx1 and TMx2; Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

PDB-9zoe:
Structure of RyR1 in complex with rosuvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-74629:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-74630:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrs:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrt:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-74282:
Consensus map of rabbit RyR1 complexed with FKBP12.6, calmodulin, ATP, and 4-chloro-m-cresol
Method: single particle / : Kim K, Clarke OB

EMDB-74290:
Focused map of rabbit RyR1 complexed with FKBP12.6, calmodulin, ATP, and 4-chloro-m-cresol (NSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74292:
Focused map of rabbit RyR1 complexed with FKBP12.6, calmodulin, ATP, and 4-chloro-m-cresol (BSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74293:
Focused map of rabbit RyR1 complexed with FKBP12.6, calmodulin, ATP, and 4-chloro-m-cresol (Core-Pore mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74294:
Focused map of rabbit RyR1 complexed with FKBP12.6, calmodulin, ATP, and 4-chloro-m-cresol (JSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74295:
Consensus map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of ADP, 4-chloro-m-cresol, caffeine, and Mg2+
Method: single particle / : Kim K, Clarke OB

EMDB-74296:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of ADP, 4-chloro-m-cresol, caffeine, and Mg2+ (NSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74297:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of ADP, 4-chloro-m-cresol, caffeine, and Mg2+ (JSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74298:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of ADP, 4-chloro-m-cresol, caffeine, and Mg2+ (BSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74299:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of ADP, 4-chloro-m-cresol, caffeine, and Mg2+ (Core-Pore mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74300:
Consensus map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene, ATP, 4-chloro-m-cresol, caffeine, and Mg2+
Method: single particle / : Kim K, Clarke OB

EMDB-74301:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene, ATP, 4-chloro-m-cresol, caffeine, and Mg2+ (NSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74302:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene, ATP, 4-chloro-m-cresol, caffeine, and Mg2+ (JSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74303:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene, ATP, 4-chloro-m-cresol, caffeine, and Mg2+ (BSol mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74304:
Focused map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene, ATP, 4-chloro-m-cresol, caffeine, and Mg2+ (Core-Pore mask)
Method: single particle / : Kim K, Clarke OB

EMDB-74305:
Consensus map of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene, ADP, 4-chloro-m-cresol, caffeine, and Mg2+
Method: single particle / : Kim K, Clarke OB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more