[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 116 items for (author: makino & y)

EMDB-60007:
Structure of the Salmonella flagellar MS-ring with C11 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-60008:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C33 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-60009:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-62210:
Structure of the 34-mer RBM3 ring of Salmonella flagellar MS-ring protein FliF with C1 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-62211:
Structure of the 33-mer RBM3 ring of Salmonella flagellar MS-ring protein FliF with C1 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

PDB-8zds:
Structure of the Salmonella flagellar MS-ring with C11 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

PDB-8zdt:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C33 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

PDB-8zdu:
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied
Method: single particle / : Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K

EMDB-37355:
Cryo-EM structure of helical filament of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

PDB-8w8m:
Cryo-EM structure of helical filament of MyD88 TIR
Method: single particle / : Kasai K, Imamura K, Narita A, Makino F, Miyata T, Kato T, Namba K, Onishi H, Tochio H

EMDB-60959:
Salmonella enterica serovar Typhimurium FliC(G426A)delta(204-292) forming the L-type straight filament
Method: helical / : Waraich K, Makino F, Miyata T, Kinoshita M, Minamino T, Namba K

PDB-9iwq:
Salmonella enterica serovar Typhimurium FliC(G426A)delta(204-292) forming the L-type straight filament
Method: helical / : Waraich K, Makino F, Miyata T, Kinoshita M, Minamino T, Namba K

EMDB-36920:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-H1147A
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-36921:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1146A
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-38247:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1146Q
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-38248:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1190A
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8k6j:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-H1147A
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8k6k:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1146A
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8xcm:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1146Q
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8xcn:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1190A
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-36190:
Cryo-EM Structure of Na-dithionite Reduced Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
Method: single particle / : Suzuki Y, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-36191:
Cryo-EM Structure of K-ferricyanide Oxidized Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
Method: single particle / : Suzuki Y, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8jej:
Cryo-EM Structure of Na-dithionite Reduced Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
Method: single particle / : Suzuki Y, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8jek:
Cryo-EM Structure of K-ferricyanide Oxidized Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
Method: single particle / : Suzuki Y, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-33972:
Cryo-EM structure of the SARS-CoV-2 spike protein (3-up RBD) bound to neutralizing antibody CSW1-1805
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33973:
Cryo-EM structure of the SARS-CoV-2 spike protein (1-up RBD) bound to neutralizing antibody CSW2-1353
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33974:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing antibody CSW2-1353
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-33975:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) with C480A mutation
Method: single particle / : Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y

EMDB-34368:
Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans
Method: single particle / : Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-34369:
Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans
Method: single particle / : Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8gy2:
Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans
Method: single particle / : Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

PDB-8gy3:
Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans
Method: single particle / : Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-33643:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab816
Method: single particle / : Uchikubo T, Shirouzu M

EMDB-33644:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab803
Method: single particle / : Uchikubo T, Shirouzu M

PDB-7y6l:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab816
Method: single particle / : Uchikubo T, Shirouzu M

PDB-7y6n:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab803
Method: single particle / : Uchikubo T, Shirouzu M

EMDB-33065:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab765
Method: single particle / : Kamada K, Shirouzu M

EMDB-33066:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab712
Method: single particle / : Kamada K, Shirouzu M

EMDB-33067:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab709
Method: single particle / : Kamada K, Shirouzu M

EMDB-33068:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab847
Method: single particle / : Kamada K, Shirouzu M

PDB-7x93:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab765
Method: single particle / : Kamada K, Shirouzu M

PDB-7x94:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab712
Method: single particle / : Kamada K, Shirouzu M

PDB-7x95:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab709
Method: single particle / : Kamada K, Shirouzu M

PDB-7x96:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab847
Method: single particle / : Kamada K, Shirouzu M

EMDB-34106:
GroEL on EG-grid stored for 3 months after graphene oxidation
Method: single particle / : Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T

EMDB-34743:
GroEL on Quantifoil grid
Method: single particle / : Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T

EMDB-32764:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
Method: single particle / : Suzuki Y, Makino F

PDB-7wsq:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus
Method: single particle / : Suzuki Y, Makino F, Miyata T, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

EMDB-33059:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab354
Method: single particle / : Kamada K, Shirouzu M

EMDB-33060:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab159
Method: single particle / : Kamada K, Shirouzu M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more