[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: lye & d)

EMDB-51027:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 dimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51028:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 trimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51029:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 tetramer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-54200:
Complex of peptidisc-embedded alpha5beta1 integrin and galectin-3
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-17269:
Rat alpha5beta1 integrin, headpiece
Method: single particle / : Roderer D, Dransart E, Shafaq-Zadah M, Bartels R, Johannes L

EMDB-17270:
Rat alpha5beta1 integrin, leg piece
Method: single particle / : Roderer D, Dransart E, Shafaq-Zadah M, Bartels R, Johannes L

PDB-8oxz:
Rat alpha5beta1 integrin, headpiece
Method: single particle / : Roderer D, Dransart E, Shafaq-Zadah M, Bartels R, Johannes L

EMDB-16904:
Structure of the MlaCD complex (1:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-16913:
Structure of the MlaCD complex (2:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

PDB-8oj4:
Structure of the MlaCD complex (1:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

PDB-8ojg:
Structure of the MlaCD complex (2:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-29423:
Structure of Escherichia coli CedA in complex with transcription initiation complex
Method: single particle / : Liu M, Vassyliev N, Nudler E

PDB-8ftd:
Structure of Escherichia coli CedA in complex with transcription initiation complex
Method: single particle / : Liu M, Vassyliev N, Nudler E

EMDB-41111:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

PDB-8t9h:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-41109:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-41113:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-41259:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-41272:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

PDB-8t9f:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

PDB-8thu:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y71:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y72:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-26427:
Structure of recombinantly assembled A53E alpha-synuclein fibrils
Method: helical / : Zhou K, Zhou H

PDB-7uak:
Structure of recombinantly assembled A53E alpha-synuclein fibrils
Method: helical / : Zhou K, Zhou H

EMDB-13474:
CryoEM structure of Rotavirus NSP2
Method: single particle / : Bravo JPK, Borodavka A

EMDB-13475:
NSP2 RNP Complex focused 3D class with substrate density
Method: single particle / : Bravo JPK, Borodavka A

EMDB-13476:
NSP2 RNP complex
Method: single particle / : Bravo JPK, Borodavka A

PDB-7pko:
CryoEM structure of Rotavirus NSP2
Method: single particle / : Bravo JPK, Borodavka A

PDB-7pkp:
NSP2 RNP complex
Method: single particle / : Bravo JPK, Borodavka A

EMDB-23529:
Structure of the Marseillevirus nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S

EMDB-23530:
Marseillevirus heterotrimeric (hexameric) nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S

PDB-7lv8:
Structure of the Marseillevirus nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S, Armache KJ

PDB-7lv9:
Marseillevirus heterotrimeric (hexameric) nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S, Armache KJ

EMDB-22137:
Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of two neutralizing antibodies
Method: single particle / : Franklin MC, Saotome K

PDB-6xdg:
Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of two neutralizing antibodies
Method: single particle / : Franklin MC, Saotome K, Romero Hernandez A, Zhou Y

EMDB-0191:
OBP chaperonin in the ADP-bound state
Method: single particle / : Stanishneva-Konovalova TB, Sokolova OS

EMDB-0204:
OBP chaperonin in the nucleotide-free state
Method: single particle / : Stanishneva-Konovalova TB, Pichkur EB, Sokolova OS

EMDB-0208:
OBP chaperonin in the ATPgammaS-bound state
Method: single particle / : Stanishneva-Konovalova TB, Sokolova OS

PDB-6hdd:
OBP chaperonin in the nucleotide-free state
Method: single particle / : Semenyuk PI, Stanishneva-Konovalova TB, Sokolova OS

EMDB-7774:
3.9A Cryo-EM structure of murine antibody bound at a novel epitope of respiratory syncytial virus fusion protein
Method: single particle / : Xie Q, Wang Z

PDB-6cxc:
3.9A Cryo-EM structure of murine antibody bound at a novel epitope of respiratory syncytial virus fusion protein
Method: single particle / : Xie Q, Wang Z, Chen X, Ni F, Ma J, Wang Q

EMDB-0652:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 3.5A reconstruction of Dot1L on H2BK120Ub nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-0653:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 4.6A reconstruction of Dot1L on H2BK120Ub nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-0654:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 5.2A reconstruction of Dot1L on H2BK120Ub nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-0655:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 4.9A reconstruction of Dot1L on unmodified nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

PDB-6o96:
Dot1L bound to the H2BK120 Ubiquitinated nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-7014:
Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state
Method: single particle / : Demo G, Rasouly A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more