[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 647 items for (author: liu & yl)

EMDB-71823:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

EMDB-69608:
Structure of the PADI6 dimer
Method: single particle / : Liu Q, Gui M

EMDB-69633:
Structure of the PADI6 tetramer assembled from two dimers
Method: single particle / : Liu Q, Gui M

EMDB-69635:
Structure of the PADI6 hexamer assembled from three dimers
Method: single particle / : Liu Q, Gui M

EMDB-69637:
Structure of the PADI6 octamer assembled from four dimers
Method: single particle / : Liu Q, Gui M

EMDB-69638:
Structure of the PADI6 decamer assembled from five dimers
Method: single particle / : Liu Q, Gui M

EMDB-69639:
Structure of the PADI6 filament
Method: single particle / : Liu Q, Gui M

EMDB-57178:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57179:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57180:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57298:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57299:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57301:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57302:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57303:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57304:
CUL1-C-terminus-RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57305:
SKP1-CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57306:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57308:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57309:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57310:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57311:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hg:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hh:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hi:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-72508:
BS3-crosslinked Smoothened/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74330:
SMO/PKA-C complex, mixed prior to grid preparation
Method: single particle / : Liu G, Myers BR

EMDB-74331:
SMO/PKA-C complex in MSP1E3D1 nanodiscs
Method: single particle / : Liu G, Myers BR

EMDB-74332:
Disulfide-trapped SMO-L637C/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74333:
EDC/Sulfo-NHS-crosslinked SMO/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74334:
SMO/PKA-C complex, dual EDC/Sulfo-NHS and BS3 crosslinking
Method: single particle / : Liu G, Myers BR

EMDB-64523:
Structure of MHV68 glycoprotein B in complex with Fab5
Method: single particle / : Cheng BZ, Fang XY, Xie C, Sun C, Liu Z, Zeng MS

EMDB-64532:
Structure of MHV68 glycoprotein B
Method: single particle / : Cheng BZ, Fang XY, Xie C, Sun C, Liu Z, Zeng MS

EMDB-64607:
Macacine gammaherpesvirus 4 glycoprotein B in complex with Fab5
Method: single particle / : Cheng BZ, Fang XY, Xie C, Sun C, Liu Z, Zeng MS

EMDB-53008:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

PDB-9qcc:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

EMDB-63948:
Cryo-EM structure of conivaptan-bound human vasopressin V2 receptor complex with Fab
Method: single particle / : Jiang Y, You CZ, Zhang TW, Xu YW, Tan YX

EMDB-63949:
Cryo-EM structure of tolvaptan-bound human vasopressin V2 receptor complex with Fab
Method: single particle / : Jiang Y, You CZ, Zhang TW, Xu YW, Tan YX

EMDB-49740:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49741:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49742:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

PDB-9nrx:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nry:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nrz:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T

EMDB-62510:
Cryo-EM map of RNF20/RNF40-RAD6A-Ub in complex with H2BS112GlcNAc nucleosome (4.58 angstrom)
Method: single particle / : Deng ZH, Ai HS, Liu L

EMDB-62623:
Local map(dC-RTC) of pre-CI RTC
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62625:
nsp13-1 bound with RNA(local map of pre CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62638:
nsp13-2 bound with RNA(local map of pre-CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62639:
nsp13-1 apo(local map of Pre-CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-71819:
Cryo-EM structure of NCLX with calcium (class 3a)
Method: single particle / : Zhang J, Feng L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more