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Showing 1 - 50 of 50,200 items for (author: li & m)

EMDB-73688:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

PDB-9z03:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

EMDB-55333:
CryoEM structure of nucleoside diphosphate kinase (NDK) dodecamer 2 from Streptococcus pneumoniae
Method: single particle / : Nouri P, Kerboeuf J, Giraud MF, Lambert O, Daury L, Kaplan E, Jault JM, Gonzalez C

EMDB-55334:
CryoEM structure of nucleoside diphosphate kinase (NDK) dodecamer 1 from Streptococcus pneumoniae
Method: single particle / : Nouri P, Kerboeuf J, Giraud MF, Lambert O, Daury L, Kaplan E, Jault JM, Gonzalez C

EMDB-56538:
Structure of the human two pore domain potassium ion channel TASK-3 L122V mutant (K2P9.1)
Method: single particle / : Hall PR, Rodstrom KEJ, Tucker SJ

PDB-28iz:
Structure of the human two pore domain potassium ion channel TASK-3 L122V mutant (K2P9.1)
Method: single particle / : Hall PR, Rodstrom KEJ, Tucker SJ

EMDB-56541:
RNA polymerase II bound to RPAP2 and Gdown1 (Map B)
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-56542:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

PDB-28jc:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-58096:
Dimer of pentameric MscL from Escherichia coli in nanodiscs
Method: single particle / : Rasmussen T, Flegler VJ, Hove TT, Bottcher B

EMDB-49696:
Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles
Method: subtomogram averaging / : Upadhye VV, Dick RA

PDB-9nqy:
Nipah Virus Matrix Lattice in Complex with Human Cell Membrane
Method: subtomogram averaging / : Upadhye VV, Dick RA

EMDB-68781:
In situ cryo sub-tomogram average of axoneme in sperm flagella from Rgs22 knockout mice
Method: subtomogram averaging / : Ye-Jun P

EMDB-66931:
Cryo-EM structure of Hsp90(E47A)-FKBP8 complex
Method: single particle / : Ge M, Li Z, Bai Z, Zhang Y, Zhang Z

PDB-9xj8:
Cryo-EM structure of Hsp90(E47A)-FKBP8 complex
Method: single particle / : Ge M, Li Z, Bai Z, Zhang Y, Zhang Z

EMDB-54707:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

PDB-9saz:
Structure of Yeast RNA polymerase II elongation complex apo-state-II
Method: single particle / : Yi G, Li Q, Zhang P, Wang D

EMDB-56124:
Asp2Cas12l-sgRNA bound to target DNA
Method: single particle / : Sasnauskas G, Tamulaitiene G, Urbaitis T, Gasiunas G

PDB-9tq4:
Asp2Cas12l-sgRNA bound to target DNA
Method: single particle / : Sasnauskas G, Tamulaitiene G, Urbaitis T, Gasiunas G

EMDB-80706:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with 5'/3' vRNA dual-promotor
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

EMDB-80707:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with the 5' vRNA promotor from the 5'/3' vRNA dual-promoter dataset
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

EMDB-80708:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in the apo3 state from the 5'/3' vRNA dual-promoter dataset
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

EMDB-80710:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in the apo2 state from the 5'/3' vRNA dual-promoter dataset
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

PDB-26jz:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with 5'/3' vRNA dual-promotor
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

PDB-26ka:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with the 5' vRNA promotor from the 5'/3' vRNA dual-promoter dataset
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

PDB-26kb:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in the apo3 state from the 5'/3' vRNA dual-promoter dataset
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

PDB-26kd:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in the apo2 state from the 5'/3' vRNA dual-promoter dataset
Method: single particle / : Ma J, Yang K, Wu H, Liu X, Liang Z

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-54644:
Locally refined map of CRBN TBD bound to spirocyclic ligand in the open conformation
Method: single particle / : Cowan AD, Rutter ZJ, McAulay K, Ciulli A

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-68655:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in apo state
Method: single particle / : Ma J, Yang K, Wu H, Liang Z

EMDB-68657:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with suramin
Method: single particle / : Ma J, Yang K, Wu H, Liang Z

EMDB-68663:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with 5' vRNA promotor
Method: single particle / : Ma J, Yang K, Wu H, Liang Z

PDB-22te:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in apo state
Method: single particle / : Ma J, Yang K, Wu H, Liang Z

PDB-22th:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with suramin
Method: single particle / : Ma J, Yang K, Wu H, Liang Z

PDB-22tr:
Cryo-EM structure of Crimean-Congo hemorrhagic fever virus RNA polymerase in complex with 5' vRNA promotor
Method: single particle / : Ma J, Yang K, Wu H, Liang Z

EMDB-74755:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to Fab H91
Method: single particle / : Morano NC, Ho DD, Shapiro L, Kwong PD

EMDB-52665:
Cryo-EM structure of human IL-36gamma in complex with the IL-36R and IL-1RAcP ectodomains
Method: single particle / : Andries J, Felix J, Clancy DM, Savvides SN

PDB-9i7x:
Cryo-EM structure of human IL-36gamma in complex with the IL-36R and IL-1RAcP ectodomains
Method: single particle / : Andries J, Felix J, Clancy DM, Savvides SN

EMDB-57643:
Dynein-Dynactin-RAB11FIP3 complex - composite
Method: single particle / : d'Amico EA, Carter AP

EMDB-54755:
80S ribosome of aged S. cerevisiae cells (day 3) - polysome fraction
Method: single particle / : Khusainov I, Beck M

EMDB-52705:
Cryo-EM structure of PSII intermediate Psb27-PSII
Method: single particle / : Bohn S, Lo YK, Lambertz J, Furtges T, Rudack T, Nowaczyk MM, Schuller JM

EMDB-52706:
Cryo-EM structure of PSII intermediate Psb32-PSII
Method: single particle / : Bohn S, Lo YK, Lambertz J, Furtges T, Rudack T, Nowaczyk MM, Schuller JM

EMDB-72185:
Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 3)
Method: single particle / : Singh R, Kaili L, Si K, Joachimiak L

PDB-9q37:
Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 3)
Method: single particle / : Singh R, Kaili L, Si K, Joachimiak L

EMDB-54697:
Chlorophyll synthase in complex with the LHC-like protein HliD, GGPP-bound state
Method: single particle / : Shvarev D, Hitchcock A, Sobotka R

EMDB-54698:
Chlorophyll synthase in complex with the LHC-like protein HliD, apo state, consensus map
Method: single particle / : Shvarev D, Hitchcock A, Sobotka R

EMDB-54699:
Chlorophyll synthase in complex with the LHC-like protein HliD, GGPP-bound state, consensus map
Method: single particle / : Shvarev D, Hitchcock A, Sobotka R

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