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- EMDB-52115: Cryo-EM structure of the human snRNA export complex comprising CB... -

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Basic information

Entry
Database: EMDB / ID: EMD-52115
TitleCryo-EM structure of the human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and capped-RNA
Map dataPrimary map
Sample
  • Complex: Human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and capped-RNA
    • Protein or peptide: Exportin-1
    • Protein or peptide: GTP-binding nuclear protein Ran
    • Protein or peptide: Nuclear cap-binding protein subunit 1
    • Protein or peptide: Nuclear cap-binding protein subunit 2
    • Protein or peptide: Phosphorylated adapter RNA export protein
    • RNA: RNA (5'-D(*(ADM))-R(P*A)-3')
  • Ligand: GUANOSINE-5'-TRIPHOSPHATE
  • Ligand: MAGNESIUM ION
  • Ligand: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
  • Ligand: water
KeywordssnRNA export / Exportin / Cap-binding / Co-transcriptional regulation / RNA BINDING PROTEIN
Function / homology
Function and homology information


mRNA cap binding complex binding / positive regulation of RNA binding / snRNA export from nucleus / cellular response to triglyceride / nuclear cap binding complex / cellular response to salt / histone mRNA metabolic process / RNA cap binding complex / mRNA metabolic process / RNA stabilization ...mRNA cap binding complex binding / positive regulation of RNA binding / snRNA export from nucleus / cellular response to triglyceride / nuclear cap binding complex / cellular response to salt / histone mRNA metabolic process / RNA cap binding complex / mRNA metabolic process / RNA stabilization / positive regulation of RNA export from nucleus / HuR (ELAVL1) binds and stabilizes mRNA / positive regulation of mRNA 3'-end processing / cap-dependent translational initiation / annulate lamellae / Processing of Intronless Pre-mRNAs / regulation of proteasomal ubiquitin-dependent protein catabolic process / snRNA binding / RNA cap binding / pre-miRNA export from nucleus / RNA nuclear export complex / snRNA import into nucleus / regulation of centrosome duplication / alternative mRNA splicing, via spliceosome / nuclear export signal receptor activity / miRNA-mediated post-transcriptional gene silencing / primary miRNA processing / SLBP independent Processing of Histone Pre-mRNAs / SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs / regulation of mRNA processing / regulatory ncRNA-mediated post-transcriptional gene silencing / Regulation of cholesterol biosynthesis by SREBP (SREBF) / Transport of the SLBP independent Mature mRNA / Transport of the SLBP Dependant Mature mRNA / RNA 7-methylguanosine cap binding / regulation of protein export from nucleus / mRNA 3'-end processing / Transport of Mature mRNA Derived from an Intronless Transcript / protein localization to nucleolus / positive regulation of mRNA splicing, via spliceosome / Rev-mediated nuclear export of HIV RNA / Nuclear import of Rev protein / mRNA 3'-end processing / NEP/NS2 Interacts with the Cellular Export Machinery / mRNA cis splicing, via spliceosome / Transport of Mature mRNA derived from an Intron-Containing Transcript / RNA catabolic process / GTP metabolic process / tRNA processing in the nucleus / Postmitotic nuclear pore complex (NPC) reformation / regulation of translational initiation / RNA Polymerase II Transcription Termination / nuclear-transcribed mRNA catabolic process, nonsense-mediated decay / Abortive elongation of HIV-1 transcript in the absence of Tat / nucleocytoplasmic transport / FGFR2 alternative splicing / MicroRNA (miRNA) biogenesis / Signaling by FGFR2 IIIa TM / DNA metabolic process / Formation of the Early Elongation Complex / Formation of the HIV-1 Early Elongation Complex / mRNA Capping / Maturation of hRSV A proteins / spliceosomal complex assembly / mRNA Splicing - Minor Pathway / mitotic sister chromatid segregation / Processing of Capped Intron-Containing Pre-mRNA / RNA polymerase II transcribes snRNA genes / ribosomal large subunit export from nucleus / 7-methylguanosine mRNA capping / Estrogen-dependent nuclear events downstream of ESR-membrane signaling / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / protein localization to nucleus / viral process / toxic substance binding / Formation of HIV-1 elongation complex containing HIV-1 Tat / nuclear pore / ribosomal subunit export from nucleus / mRNA export from nucleus / Cajal body / Formation of HIV elongation complex in the absence of HIV Tat / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / Cyclin A/B1/B2 associated events during G2/M transition / ribosomal small subunit export from nucleus / Formation of RNA Pol II elongation complex / Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal / NPAS4 regulates expression of target genes / RNA Polymerase II Pre-transcription Events / Mitotic Prometaphase / centriole / EML4 and NUDC in mitotic spindle formation / Transcriptional and post-translational regulation of MITF-M expression and activity / mRNA Splicing - Major Pathway / RNA splicing / Resolution of Sister Chromatid Cohesion / protein export from nucleus / Downregulation of TGF-beta receptor signaling / mitotic spindle organization / Deactivation of the beta-catenin transactivating complex / positive regulation of transcription elongation by RNA polymerase II
Similarity search - Function
Phosphorylated adapter RNA export protein / Phosphorylated adapter RNA export protein, RNA-binding domain / Phosphorylated adapter RNA export protein, RNA-binding domain superfamily / Phosphorylated adapter RNA export protein, RNA-binding domain / MIF4G-like, type 1 / MIF4G-like, type 2 / Nuclear cap-binding protein subunit 1 / MIF4G like / MIF4G like / Nuclear cap-binding protein subunit 2 ...Phosphorylated adapter RNA export protein / Phosphorylated adapter RNA export protein, RNA-binding domain / Phosphorylated adapter RNA export protein, RNA-binding domain superfamily / Phosphorylated adapter RNA export protein, RNA-binding domain / MIF4G-like, type 1 / MIF4G-like, type 2 / Nuclear cap-binding protein subunit 1 / MIF4G like / MIF4G like / Nuclear cap-binding protein subunit 2 / NCBP2, RNA recognition motif / Exportin-1, repeat 3 / Chromosome region maintenance repeat / Exportin-1, repeat 2 / Chromosome region maintenance or exportin repeat / CRM1 / Exportin repeat 2 / CRM1 / Exportin repeat 3 / CRM1 C terminal / Exportin-1, C-terminal / CRM1 C terminal / Exportin-1/5 / Exportin-1/Importin-beta-like / Exportin 1-like protein / MIF4G domain / Middle domain of eukaryotic initiation factor 4G (eIF4G) / MIF4G-like, type 3 / Ran GTPase / Small GTPase Ran-type domain profile. / Importin-beta N-terminal domain / Importin-beta N-terminal domain / Importin-beta N-terminal domain profile. / Importin-beta, N-terminal domain / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases / Rho (Ras homology) subfamily of Ras-like small GTPases / Ras subfamily of RAS small GTPases / Small GTPase / Ras family / RNA recognition motif / RNA recognition motif / Eukaryotic RNA Recognition Motif (RRM) profile. / RNA recognition motif domain / Rab subfamily of small GTPases / RNA-binding domain superfamily / Armadillo-like helical / Small GTP-binding protein domain / Armadillo-type fold / Nucleotide-binding alpha-beta plait domain superfamily / P-loop containing nucleoside triphosphate hydrolase
Similarity search - Domain/homology
Exportin-1 / Nuclear cap-binding protein subunit 2 / GTP-binding nuclear protein Ran / Nuclear cap-binding protein subunit 1 / Phosphorylated adapter RNA export protein
Similarity search - Component
Biological speciesHomo sapiens (human)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.62 Å
AuthorsDubiez E / Cusack S / Kadlec J
Funding support France, 1 items
OrganizationGrant numberCountry
Agence Nationale de la Recherche (ANR) France
CitationJournal: Nat Struct Mol Biol / Year: 2025
Title: Structural basis for the synergistic assembly of the snRNA export complex.
Authors: Etienne Dubiez / William Garland / Maja Finderup Brask / Elisabetta Boeri Erba / Torben Heick Jensen / Jan Kadlec / Stephen Cusack /
Abstract: The nuclear cap-binding complex (CBC) and its partner Arsenite-Resistance Protein 2 (ARS2) regulate the fate of RNA polymerase II transcripts via mutually exclusive interactions with RNA effectors. ...The nuclear cap-binding complex (CBC) and its partner Arsenite-Resistance Protein 2 (ARS2) regulate the fate of RNA polymerase II transcripts via mutually exclusive interactions with RNA effectors. One such effector is PHAX, which mediates the nuclear export of U-rich small nuclear RNAs (snRNAs). Here we present the cryo-electron microscopy structure of the human snRNA export complex comprising phosphorylated PHAX, CBC, CRM1-RanGTP and capped RNA. The central region of PHAX bridges CBC to the export factor CRM1-RanGTP, while also reinforcing cap dinucleotide binding. Additionally, PHAX interacts with a distant region of CRM1, facilitating contacts of the essential phosphorylated region of PHAX with the prominent basic surface of RanGTP. CBC engagement within the snRNA export complex is incompatible with its binding to other RNA effectors such as ALYREF or NCBP3. We demonstrate that snRNA export complex formation requires synergistic binding of all its components, which in turn displaces ARS2 from CBC and commits the complex for export.
History
DepositionNov 18, 2024-
Header (metadata) releaseJul 16, 2025-
Map releaseJul 16, 2025-
UpdateJul 16, 2025-
Current statusJul 16, 2025Processing site: PDBe / Status: Released

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Structure visualization

Supplemental images

emd_52115.png

Downloads & links

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Map

FileDownload / File: emd_52115.map.gz / Format: CCP4 / Size: 244.1 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationPrimary map
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
0.84 Å/pix.
x 400 pix.
= 336. Å		0.84 Å/pix.
x 400 pix.
= 336. Å		0.84 Å/pix.
x 400 pix.
= 336. Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 0.84 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.025
Minimum - Maximum-0.11259664 - 0.21189667
Average (Standard dev.)0.000039268776 (±0.0044500814)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions400400400
Spacing400400400
CellA=B=C: 336.0 Å
α=β=γ: 90.0 °

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Supplemental data

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Additional map: Sharpened map

Fileemd_52115_additional_1.map
AnnotationSharpened map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Additional map: Local Refinement around CBC

Fileemd_52115_additional_2.map
AnnotationLocal Refinement around CBC
Projections & Slices
AxesZYX

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Slices (1/2)
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Histogram

Histogram (log scale)

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Additional map: Local Refinement around CRM1

Fileemd_52115_additional_3.map
AnnotationLocal Refinement around CRM1
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: Half-map 1

Fileemd_52115_half_map_1.map
AnnotationHalf-map 1
Projections & Slices
AxesZYX

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Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: Half-map 2

Fileemd_52115_half_map_2.map
AnnotationHalf-map 2
Projections & Slices
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Sample components

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Entire : Human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and ca...

EntireName: Human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and capped-RNA
Components
  • Complex: Human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and capped-RNA
    • Protein or peptide: Exportin-1
    • Protein or peptide: GTP-binding nuclear protein Ran
    • Protein or peptide: Nuclear cap-binding protein subunit 1
    • Protein or peptide: Nuclear cap-binding protein subunit 2
    • Protein or peptide: Phosphorylated adapter RNA export protein
    • RNA: RNA (5'-D(*(ADM))-R(P*A)-3')
  • Ligand: GUANOSINE-5'-TRIPHOSPHATE
  • Ligand: MAGNESIUM ION
  • Ligand: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
  • Ligand: water

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Supramolecule #1: Human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and ca...

SupramoleculeName: Human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and capped-RNA
type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#6
Source (natural)Organism: Homo sapiens (human)

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Macromolecule #1: Exportin-1

MacromoleculeName: Exportin-1 / type: protein_or_peptide / ID: 1 / Details: Human Exportin 1 CRM1 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 123.518359 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString: MPAIMTMLAD HAARQLLDFS QKLDINLLDN VVNCLYHGEG AQQRMAQEVL THLKEHPDAW TRVDTILEFS QNMNTKYYGL QILENVIKT RWKILPRNQC EGIKKYVVGL IIKTSSDPTC VEKEKVYIGK LNMILVQILK QEWPKHWPTF ISDIVGASRT S ESLCQNNM ...String:
MPAIMTMLAD HAARQLLDFS QKLDINLLDN VVNCLYHGEG AQQRMAQEVL THLKEHPDAW TRVDTILEFS QNMNTKYYGL QILENVIKT RWKILPRNQC EGIKKYVVGL IIKTSSDPTC VEKEKVYIGK LNMILVQILK QEWPKHWPTF ISDIVGASRT S ESLCQNNM VILKLLSEEV FDFSSGQITQ VKSKHLKDSM CNEFSQIFQL CQFVMENSQN APLVHATLET LLRFLNWIPL GY IFETKLI STLIYKFLNV PMFRNVSLKC LTEIAGVSVS QYEEQFVTLF TLTMMQLKQM LPLNTNIRLA YSNGKDDEQN FIQ NLSLFL CTFLKEHDQL IEKRLNLRET LMEALHYMLL VSEVEETEIF KICLEYWNHL AAELYRESPF STSASPLLSG SQHF DVPPR RQLYLPMLFK VRLLMVSRMA KPEEVLVVEN DQGEVVREFM KDTDSINLYK NMRETLVYLT HLDYVDTERI MTEKL HNQV NGTEWSWKNL NTLCWAIGSI SGAMHEEDEK RFLVTVIKDL LGLCEQKRGK DNKAIIASNI MYIVGQYPRF LRAHWK FLK TVVNKLFEFM HETHDGVQDM ACDTFIKIAQ KCRRHFVQVQ VGEVMPFIDE ILNNINTIIC DLQPQQVHTF YEAVGYM IG AQTDQTVQEH LIEKYMLLPN QVWDSIIQQA TKNVDILKDP ETVKQLGSIL KTNVRACKAV GHPFVIQLGR IYLDMLNV Y KCLSENISAA IQANGEMVTK QPLIRSMRTV KRETLKLISG WVSRSNDPQM VAENFVPPLL DAVLIDYQRN VPAAREPEV LSTMAIIVNK LGGHITAEIP QIFDAVFECT LNMINKDFEE YPEHRTNFFL LLQAVNSHCF PAFLAIPPTQ FKLVLDSIIW AFKHTMRNV ADTGLQILFT LLQNVAQEEA AAQSFYQTYF CDILQHIFSV VTDTSHTAGL TMHASILAYM FNLVEEGKIS T SLNPGNPV NNQIFLQEYV ANLLKSAFPH LQDAQVKLFV TGLFSLNQDI PAFKEHLRDF LVQIKEFAGE DTSDLFLEER EI ALRQADE EKHKRQMSVP GIFNPHEIPE EMCD

UniProtKB: Exportin-1

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Macromolecule #2: GTP-binding nuclear protein Ran

MacromoleculeName: GTP-binding nuclear protein Ran / type: protein_or_peptide / ID: 2 / Details: RanGTP Q69L catalytic mutant / Number of copies: 1 / Enantiomer: LEVO
EC number: Hydrolases; Acting on acid anhydrides; Acting on GTP to facilitate cellular and subcellular movement
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 24.441135 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString: MAAQGEPQVQ FKLVLVGDGG TGKTTFVKRH LTGEFEKKYV ATLGVEVHPL VFHTNRGPIK FNVWDTAGLE KFGGLRDGYY IQAQCAIIM FDVTSRVTYK NVPNWHRDLV RVCENIPIVL CGNKVDIKDR KVKAKSIVFH RKKNLQYYDI SAKSNYNFEK P FLWLARKL ...String:
MAAQGEPQVQ FKLVLVGDGG TGKTTFVKRH LTGEFEKKYV ATLGVEVHPL VFHTNRGPIK FNVWDTAGLE KFGGLRDGYY IQAQCAIIM FDVTSRVTYK NVPNWHRDLV RVCENIPIVL CGNKVDIKDR KVKAKSIVFH RKKNLQYYDI SAKSNYNFEK P FLWLARKL IGDPNLEFVA MPALAPPEVV MDPALAAQYE HDLEVAQTTA LPDEDDDL

UniProtKB: GTP-binding nuclear protein Ran

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Macromolecule #3: Nuclear cap-binding protein subunit 1

MacromoleculeName: Nuclear cap-binding protein subunit 1 / type: protein_or_peptide / ID: 3 / Details: Human NCBP1 CBP80 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 91.960297 KDa
Recombinant expressionOrganism: Baculovirus expression vector pFastBac1-HM
SequenceString: MSRRRHSDEN DGGQPHKRRK TSDANETEDH LESLICKVGE KSACSLESNL EGLAGVLEAD LPNYKSKILR LLCTVARLLP EKLTIYTTL VGLLNARNYN FGGEFVEAMI RQLKESLKAN NYNEAVYLVR FLSDLVNCHV IAAPSMVAMF ENFVSVTQEE D VPQVRRDW ...String:
MSRRRHSDEN DGGQPHKRRK TSDANETEDH LESLICKVGE KSACSLESNL EGLAGVLEAD LPNYKSKILR LLCTVARLLP EKLTIYTTL VGLLNARNYN FGGEFVEAMI RQLKESLKAN NYNEAVYLVR FLSDLVNCHV IAAPSMVAMF ENFVSVTQEE D VPQVRRDW YVYAFLSSLP WVGKELYEKK DAEMDRIFAN TESYLKRRQK THVPMLQVWT ADKPHPQEEY LDCLWAQIQK LK KDRWQER HILRPYLAFD SILCEALQHN LPPFTPPPHT EDSVYPMPRV IFRMFDYTDD PEGPVMPGSH SVERFVIEEN LHC IIKSHW KERKTCAAQL VSYPGKNKIP LNYHIVEVIF AELFQLPAPP HIDVMYTTLL IELCKLQPGS LPQVLAQATE MLYM RLDTM NTTCVDRFIN WFSHHLSNFQ FRWSWEDWSD CLSQDPESPK PKFVREVLEK CMRLSYHQRI LDIVPPTFSA LCPAN PTCI YKYGDESSNS LPGHSVALCL AVAFKSKATN DEIFSILKDV PNPNQDDDDD EGFSFNPLKI EVFVQTLLHL AAKSFS HSF SALAKFHEVF KTLAESDEGK LHVLRVMFEV WRNHPQMIAV LVDKMIRTQI VDCAAVANWI FSSELSRDFT RLFVWEI LH STIRKMNKHV LKIQKELEEA KEKLARQHKR RSDDDDRSSD RKDGVLEEQI ERLQEKVESA QSEQKNLFLV IFQRFIMI L TEHLVRCETD GTSVLTPWYK NCIERLQQIF LQHHQIIQQY MVTLENLLFT AELDPHILAV FQQFCALQA

UniProtKB: Nuclear cap-binding protein subunit 1

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Macromolecule #4: Nuclear cap-binding protein subunit 2

MacromoleculeName: Nuclear cap-binding protein subunit 2 / type: protein_or_peptide / ID: 4 / Details: Human NCBP2 CBP20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 18.028131 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString:
MSGGLLKALR SDSYVELSQY RDQHFRGDNE EQEKLLKKSC TLYVGNLSFY TTEEQIYELF SKSGDIKKII MGLDKMKKTA CGFCFVEYY SRADAENAMR YINGTRLDDR IIRTDWDAGF KEGRQYGRGR SGGQVRDEYR QDYDAGRGGY GKLAQNQ

UniProtKB: Nuclear cap-binding protein subunit 2

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Macromolecule #5: Phosphorylated adapter RNA export protein

MacromoleculeName: Phosphorylated adapter RNA export protein / type: protein_or_peptide / ID: 5 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 44.468574 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString: MALEVGDMED GQLSDSDSDM TVAPSDRPLQ LPKVLGGDSA MRAFQNTATA CAPVSHYRAV ESVDSSEESF SDSDDDSCLW KRKRQKCFN PPPKPEPFQF GQSSQKPPVA GGKKINNIWG AVLQEQNQDA VATELGILGM EGTIDRSRQS ETYNYLLAKK L RKESQEHT ...String:
MALEVGDMED GQLSDSDSDM TVAPSDRPLQ LPKVLGGDSA MRAFQNTATA CAPVSHYRAV ESVDSSEESF SDSDDDSCLW KRKRQKCFN PPPKPEPFQF GQSSQKPPVA GGKKINNIWG AVLQEQNQDA VATELGILGM EGTIDRSRQS ETYNYLLAKK L RKESQEHT KDLDKELDEY MHGGKKMGSK EEENGQGHLK RKRPVKDRLG NRPEMNYKGR YEITAEDSQE KVADEISFRL QE PKKDLIA RVVRIIGNKK AIELLMETAE VEQNGGLFIM NGSRRRTPGG VFLNLLKNTP SISEEQIKDI FYIENQKEYE NKK AARKRR TQVLGKKMKQ AIKSLNFQED DDTSRETFAS DTNEALASLD ESQEGHAEAK LEAEEAIEVD HSHDLDIF

UniProtKB: Phosphorylated adapter RNA export protein

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Macromolecule #6: RNA (5'-D(*(ADM))-R(P*A)-3')

MacromoleculeName: RNA (5'-D(*(ADM))-R(P*A)-3') / type: rna / ID: 6 / Number of copies: 1
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 4.439715 KDa
SequenceString:
AAUCUAUAAU AGCA

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Macromolecule #7: GUANOSINE-5'-TRIPHOSPHATE

MacromoleculeName: GUANOSINE-5'-TRIPHOSPHATE / type: ligand / ID: 7 / Number of copies: 1 / Formula: GTP
Molecular weightTheoretical: 523.18 Da
Chemical component information

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

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Macromolecule #8: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 8 / Number of copies: 1 / Formula: MG
Molecular weightTheoretical: 24.305 Da

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Macromolecule #9: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE

MacromoleculeName: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE / type: ligand / ID: 9 / Number of copies: 1 / Formula: GTA
Molecular weightTheoretical: 787.441 Da
Chemical component information

ChemComp-GTA:
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE

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Macromolecule #10: water

MacromoleculeName: water / type: ligand / ID: 10 / Number of copies: 32 / Formula: HOH
Molecular weightTheoretical: 18.015 Da
Chemical component information

ChemComp-HOH:
WATER

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

Concentration1 mg/mL
BufferpH: 8
VitrificationCryogen name: ETHANE

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: GATAN K3 (6k x 4k) / Average electron dose: 40.5 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.2 µm / Nominal defocus min: 1.0 µm
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

CTF correctionType: NONE
Startup modelType of model: PDB ENTRY
PDB model - PDB ID:

8pnt

Final reconstructionResolution.type: BY AUTHOR / Resolution: 2.62 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 202738
Initial angle assignmentType: OTHER
Final angle assignmentType: OTHER
FSC plot (resolution estimation)

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