[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 37,233 items for (author: li & b)

EMDB-63426:
TMEM164-substrate
Method: single particle / : Zhang MF

PDB-9lw1:
TMEM164-substrate
Method: single particle / : Zhang MF

EMDB-65801:
Cryo-EM structure of SARS-CoV-2 WT 6p spike protein in complex with P5-1C8 IgG (1.5 IgG)
Method: single particle / : Lv NN, Yang RY

EMDB-65802:
Cryo-EM structure of SARS-CoV-2 WT 6p spike protein in complex with P5-1C8 IgG (1 IgG)
Method: single particle / : Lv NN, Yang RY

EMDB-65803:
Immune complex of P5-1C8 Fab binding the RBD of Omicron JN.1 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-65804:
Immune complex of P5-1C8 Fab binding the RBD of Omicron BA.1 6p spike protein (2 Fab)
Method: single particle / : Lv NN, Yang RY

EMDB-65805:
Immune complex of P5-1C8 Fab binding the RBD of Omicron BA.1 6p spike protein (1 Fab)
Method: single particle / : Lv NN, Yang RY

EMDB-65806:
Immune complex of P5-1C8 IgG binding the RBD of Omicron BA.1 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-65807:
Immune complex of P5-1C8 Fab binding the RBD of SARS-CoV-2 WT 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-65808:
Immune complex of P5-1C8 IgG binding the RBD of SARS-CoV-2 WT 6p spike protein
Method: single particle / : Lv NN, Yang RY

EMDB-47886:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, consensus map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47887:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, CARF domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47888:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, deaminase domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47890:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-48116:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9ebt:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9eka:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-63979:
RABV G binding with CTB011 Fab and CTB012 Fab
Method: single particle / : Cao L, Zhang C

PDB-9ua5:
RABV G binding with CTB011 Fab and CTB012 Fab
Method: single particle / : Cao L, Zhang C

EMDB-62870:
Structures and mechanism of the nicotinamide nucleotide transhydrogenase from E. coli
Method: single particle / : Zhu J, Zhang K, Gennis RB, Li J

PDB-9l76:
Structures and mechanism of the nicotinamide nucleotide transhydrogenase from E. coli
Method: single particle / : Zhu J, Zhang K, Gennis RB, Li J

EMDB-62923:
Cryo-EM structure of Shewanella oneidensis MR-1 PilA pili.
Method: helical / : Li DN, Liu C, Li D, Dai B

EMDB-62924:
Cryo-EM structure of Shewanella oneidensis MR-1 MshA pili.
Method: helical / : Li DN, Liu C, Li D, Dai B

EMDB-63352:
S-ECD of SARS-CoV-2 Delta variant in complex with Fab854
Method: single particle / : Li YN, Yan RH, Ju B, Zhang Z

PDB-9ls3:
S-ECD of SARS-CoV-2 Delta variant in complex with Fab854
Method: single particle / : Li YN, Yan RH, Ju B, Zhang Z

EMDB-62928:
Cryo-EM structure of Shewanella oneidensis MR-1 flagella.
Method: helical / : Li DN, Liu C, Li D, Dai B

EMDB-48622:
Structure of a native Drosophila melanogaster Pol II Elongation Complex with a well-defined Rpb4/Rpb7 stalk
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9mu7:
Structure of a native Drosophila melanogaster Pol II Elongation Complex with a well-defined Rpb4/Rpb7 stalk
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9qcd:
Micro-ED structure of the NSH2-CSH2 tandem domain of SHP2 in complex with the bis-phosphorylated pY627-pY659-Gab1 (613-694) peptide
Method: electron crystallography / : Machner L, Shaikhqasem A, Hamdi F, Breithaupt C, Parthier C, Kyrilis FL, Kastritis PL, Feller SM, Stubbs MT

EMDB-65211:
Cryo-EM structure of hnRAC1-2,8beta fibril polymorph2
Method: helical / : Li YS, Li DN, Dai B

EMDB-65213:
Cryo-EM structure of hnRAC1-2,8beta fibril polymorph1
Method: helical / : Li YS, Li DN, Dai B

EMDB-65214:
Cryo-EM structure of hnRAC1-2,8homobeta fibril
Method: helical / : Li YS, Li DN, Dai B

PDB-9vnk:
Cryo-EM structure of hnRAC1-2,8beta fibril polymorph2
Method: helical / : Li YS, Li DN, Dai B

PDB-9vnm:
Cryo-EM structure of hnRAC1-2,8beta fibril polymorph1
Method: helical / : Li YS, Li DN, Dai B

PDB-9vnn:
Cryo-EM structure of hnRAC1-2,8homobeta fibril
Method: helical / : Li YS, Li DN, Dai B

EMDB-45440:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

PDB-9cca:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

EMDB-73147:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73148:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73149:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73151:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73152:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73154:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73155:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73156:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73157:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73158:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73159:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73160:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73161:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more