[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,976 items for (author: li & aj)

EMDB-72277:
Cryo-EM map of Plasmodium falciparum 20S proteasome bound to an asparagine-ethylenediamine based inhibitor TDI6245
Method: single particle / : Hsu HC, Li H

EMDB-54904:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54905:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54925:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

EMDB-55037:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55097:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55099:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

EMDB-55105:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-55115:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-75126:
E. coli TGT covalent intermediate with 2 tRNAs
Method: single particle / : Harjung A, Devaraj N

PDB-10fc:
E. coli TGT covalent intermediate with 2 tRNAs
Method: single particle / : Harjung A, Devaraj N

EMDB-56552:
CLASS-1_APE_CRYO-EM CONSENSUS MAP OF LD32CS1C1 EDITED RIBOSOMES IN COMPLEX WITH MRNA AND TRNA
Method: single particle / : Rajan KS, Yonath A

EMDB-56554:
CLASS-2_EP_CRYO-EM CONSENSUS MAP OF LD32CS1C1 EDITED RIBOSOMES IN COMPLEX WITH MRNA AND TRNA
Method: single particle / : Rajan KS, Yonath A

EMDB-56555:
CLASS-5_APE_CRYO-EM CONSENSUS MAP OF LD32CS1C1 EDITED RIBOSOMES IN COMPLEX WITH MRNA AND TRNA
Method: single particle / : Rajan KS, Yonath A

EMDB-56556:
CLASS-6_APE_CRYO-EM CONSENSUS MAP OF LD32CS1C1 EDITED RIBOSOMES IN COMPLEX WITH MRNA AND TRNA
Method: single particle / : Rajan KS, Yonath A

EMDB-56557:
CLASS-7_EP_CRYO-EM CONSENSUS MAP OF LD32CS1C1 EDITED RIBOSOMES IN COMPLEX WITH MRNA AND TRNA
Method: single particle / : Rajan KS, Yonath A

EMDB-57250:
Cryo-EM consensus map of lm32cs1c1 m6 overexpression : class 10
Method: single particle / : Rajan KS, Yoanth A

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-68782:
In situ cryo sub-tomogram average of the ciliary axoneme from Rgs22 knockout mouse ependymal progenitor cells
Method: subtomogram averaging / : Ye-Jun P

EMDB-65226:
Cryo-EM Structure of GPR158 in Complex with RGS7-Gbeta5 and Nanobody Nb20
Method: single particle / : Laboute T, Zucca S, Sial M, Sharma M, Brunori G, Singh S, Singh A, Martemyanov K

PDB-9vos:
Cryo-EM Structure of GPR158 in Complex with RGS7-Gbeta5 and Nanobody Nb20
Method: single particle / : Laboute T, Zucca S, Sial M, Sharma M, Brunori G, Singh S, Singh A, Martemyanov K

EMDB-75124:
E. coli tRNA guanine transgylcosylase
Method: single particle / : Harjung A, Devaraj N

EMDB-75125:
E. coli TGT covalent intermediate with 1 tRNA
Method: single particle / : Harjung A, Devaraj N

PDB-10fa:
E. coli tRNA guanine transgylcosylase
Method: single particle / : Harjung A, Devaraj N

PDB-10fb:
E. coli TGT covalent intermediate with 1 tRNA
Method: single particle / : Harjung A, Devaraj N

EMDB-73644:
AI-generated RNA-guided nuclease TAM-bound state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

EMDB-73645:
AI-generated RNA-guided nuclease R-loop formed state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

PDB-9yyg:
AI-generated RNA-guided nuclease TAM-bound state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

PDB-9yyh:
AI-generated RNA-guided nuclease R-loop formed state
Method: single particle / : Skopintsev P, Esain-Garcia I, Doudna J

EMDB-51874:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

PDB-9h52:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

EMDB-76165:
Nipah virus fusion protein with 20G7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-76168:
Nipah virus fusion protein ectodomain in complex with 8C7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-76170:
Hendra virus fusion protein ectodomain in complex with 9A9 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-71737:
Human 19S proteasome bound to TXNL1 PITH domain without C-terminus
Method: single particle / : Chen X, Negi H, Walters KJ

PDB-9pmj:
Human 19S proteasome bound to TXNL1 PITH domain without C-terminus
Method: single particle / : Chen X, Negi H, Walters KJ

EMDB-54129:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Outward conformation) (State M3)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-54130:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-54131:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)
Method: single particle / : Singh V, Shiriaev DI, Khawaja A, Rorbach J

EMDB-54163:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-57663:
human mitochondrial ribosome small subunit: Initiation complex with IF3 (State I2)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

EMDB-57667:
Human mitochondrial small ribosomal subunit: Initiation complex with IF2 and IF3 (State I3)
Method: single particle / : Singh V, Khawaja A, Shiriaev D

EMDB-57668:
Human mitochondrial small ribosomal subunit: Initiation complex with IF2 and tRNA (state I4)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

EMDB-57669:
Human mitochondrial small ribosomal subunit: Assembly intermediate with IF3 and RBFA-out (state I1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

PDB-9ror:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Outward conformation) (State M3)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rot:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rov:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rpf:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-71429:
PCP bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more