[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 81 items for (author: lewis & rj)

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-49269:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Method: single particle / : Yao Q, Yu X

EMDB-49276:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA and ATP-gamma-S
Method: single particle / : Yao Q, Yu X

EMDB-49277:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA and ATP-gamma-S
Method: single particle / : Yao Q, Yu X

EMDB-49290:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49291:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49304:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Method: single particle / : Yao Q, Yu X

EMDB-49306:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49326:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

PDB-9nda:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Method: single particle / : Yao Q, Yu X

PDB-9ndq:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA and ATP-gamma-S
Method: single particle / : Yao Q, Yu X

PDB-9ndt:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA and ATP-gamma-S
Method: single particle / : Yao Q, Yu X

PDB-9ndz:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X

PDB-9ne0:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X

PDB-9neb:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Method: single particle / : Yao Q, Yu X

PDB-9nee:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Method: single particle / : Yao Q, Yu X

PDB-9nel:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Method: single particle / : Yao Q, Yu X

EMDB-47004:
Focused refinement map on C-terminal half of LRRK2 (RoC-CORA domains)
Method: single particle / : Sanz-Murillo M, Leschziner A

EMDB-47006:
Structure of the C-terminal half of LRRK2 bound to RN277 (Type-II inhibitor)
Method: single particle / : Sanz-Murillo M, Leschziner A

EMDB-47025:
Focused refinement map on C-terminal half of LRRK2 bound to RN277 (CORB-Kinase-WD40 domains)
Method: single particle / : Sanz-Murillo M, Leschziner A

PDB-9dmi:
Structure of the C-terminal half of LRRK2 bound to RN277 (Type-II inhibitor)
Method: single particle / : Sanz-Murillo M, Leschziner A

EMDB-19195:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19196:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61, all-particle reconstruction
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19197:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19198:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19199:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61, bound TRAP-alpha TMD
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19200:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, conformation 1
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19201:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, conformation 2
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19202:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61, closed conformation 1
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19203:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61, closed conformation 2
Method: single particle / : Lewis AJO, Hegde RS

EMDB-19204:
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Rho-bound Sec61
Method: single particle / : Lewis AJO, Hegde RS

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-25994:
Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
Method: single particle / : Kim MK, Lewis AJO, Keenan RJ, Hegde RS

EMDB-26133:
Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon
Method: single particle / : Kim MK, Lewis AJO, Keenan RJ, Hegde RS

EMDB-12676:
Vibrio vulnificus stressosome
Method: single particle / : Kaltwasser S, Heinz V

EMDB-11971:
Stressosome complex from Listeria innocua
Method: single particle / : Miksys A, Fu L

EMDB-24619:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1024 Fab in complex with HIV-1 Env CH505 SOSIP trimer
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24620:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1025.1 Fab in complex with HIV-1 Env CH505 SOSIP trimer
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24621:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1027 Fab in complex with HIV-1 Env CH505 SOSIP trimer.
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24622:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH1028 Fab in complex with HIV-1 Env CH505 SOSIP trimer.
Method: single particle / : Edwards RJ, Mansouri K

EMDB-24623:
Negative stain electron microscopy single particle reconstruction of monoclonal antibody DH950 Fab in complex with HIV-1 Env CH505 SOSIP trimer.
Method: single particle / : Edwards RJ, Mansouri K

EMDB-23400:
SARS-CoV-2 Spike Protein Trimer bound to DH1043 fab
Method: single particle / : Gobeil S, Acharya P

EMDB-23246:
CryoEM map of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1041
Method: single particle / : Manne K, Acharya P

EMDB-23248:
CryoEM map of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1052
Method: single particle / : Manne K, Acharya P

EMDB-23277:
CryoEM map of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1050.1
Method: single particle / : Manne K, Acharya P

EMDB-23279:
CryoEM map of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1047
Method: single particle / : Manne K, Acharya P

EMDB-22929:
Negative stain electron microscopy structure of RBD-directed Fab DH1044 in complex with 2P SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22930:
Negative stain electron microscopy reconstruction of cross-reactive RBD-directed Fab DH1045 complexed with hexapro SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22933:
Negative stain electro microscopy reconstruction of cross-reactive RBD-directed Fab DH1047 in complex with hexapro SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22936:
Negative stain electron microscopy reconstruction of NTD-directed neutralizing antibody Fab DH1048 in complex with hexapro SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more