[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 774 items for (author: kumar & st)

EMDB-76879:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (delSagA)
Method: subtomogram averaging / : Park D

EMDB-76880:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (delSagA-complemented)
Method: subtomogram averaging / : Park D

EMDB-76881:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (vancomycin treated)
Method: subtomogram averaging / : Park D

EMDB-76882:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (pghi-4 treated)
Method: subtomogram averaging / : Park D

EMDB-76883:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (vancomycin + pghi-4 treated)
Method: subtomogram averaging / : Park D

EMDB-76884:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (wt)
Method: subtomogram averaging / : Park D

EMDB-53843:
Cryo-EM structure of the human pre-Bact-OTS complex (whole map)
Method: single particle / : Zhang Z, Kumar V, Zhong J, Dybkov O, Kastner B, Urlaub H, Luhrmann R

PDB-9r8v:
Cryo-EM structure of the human pre-Bact-OTS complex (whole map)
Method: single particle / : Zhang Z, Kumar V, Zhong J, Dybkov O, Kastner B, Urlaub H, Luhrmann R

EMDB-53554:
Cryo-EM structure of the human pre-Bact-OTS complex (whole map)
Method: single particle / : Zhang Z, Kumar V, Zhong J, Dybkov O, Kastner B, Urlaub H, Luhrmann R

PDB-9r3d:
Cryo-EM structure of the human pre-Bact-OTS complex (whole map)
Method: single particle / : Zhang Z, Kumar V, Zhong J, Dybkov O, Kastner B, Urlaub H, Luhrmann R

EMDB-57762:
TMV Map using Pulsed Illumination
Method: single particle / : Kumar V, Radecke J, Chinmaya KV, Mohammed I, Ferreira RC, Harder D, Fotiadis D, Stahlberg H

EMDB-57764:
TMV Map using Random (Conventional) Illumination
Method: single particle / : Kumar V, Radecke J, Chinmaya KV, Mohammed I, Ferreira RC, Harder D, Fotiadis D, Stahlberg H

EMDB-66202:
Cryo-EM structure of SARS CoV2 S protein with stabilising mutations
Method: single particle / : Srivastava S, Mishra S, Dutta S, Varadarajan R

PDB-9wsp:
Cryo-EM structure of SARS CoV2 S protein with stabilising mutations
Method: single particle / : Srivastava S, Mishra S, Dutta S, Varadarajan R

PDB-9skg:
Serial electron diffraction (SerialED) structure of Ribonucleotide reductase R2 from E. coli in its reduced (red) form
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjx:
Serial electron diffraction (SerialED) structure of Y122F mutant Ribonucleotide reductase R2 from E. coli in its oxidised (met) form (re-oxidised)
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjy:
Serial electron diffraction (SerialED) structure of Ribonucleotide reductase R2 from E. coli in its oxidised (met) form
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sk1:
Serial electron diffraction (SerialED) structure of Y122F mutant Ribonucleotide reductase R2 from E. coli in its reduced (red) form
Method: electron crystallography / : Pacoste L, Kumar R, Srinivas V, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjw:
Serial electron diffraction (SerialED) structure of Y122F mutant Ribonucleotide reductase R2 from E. coli in its oxidised (met) form
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjz:
Serial electron diffraction (SerialED) structure of Ribonucleotide reductase R2 from E. coli in its oxidised (met) form (re-oxidised)
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

EMDB-53117:
LY12 Main Morphology
Method: helical / : Stoyanov N, Schmidt M, Faendrich M

PDB-9qfm:
LY12 Main Morphology
Method: helical / : Stoyanov N, Schmidt M, Faendrich M

EMDB-73268:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73283:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

EMDB-73288:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73362:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73367:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73368:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

PDB-9yop:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yp4:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

PDB-9yp9:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yr7:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yrg:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yrh:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

EMDB-54006:
Population B fibril generated from the Heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

EMDB-54007:
Population A fibril generated from the Heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

EMDB-56480:
Medin fibril generated from the heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Zorzini V, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

EMDB-49397:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in Apo state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

PDB-9ngz:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in Apo state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

EMDB-49347:
cryo-EM structure of Serendipita indica sulfate transporter SiSulT in sulphate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

PDB-9nf7:
cryo-EM structure of Serendipita indica sulfate transporter SiSulT in sulphate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

EMDB-49571:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in oxlate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

PDB-9nnc:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in oxlate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

EMDB-72760:
Human uPAR bound to the Fab fragment of targeted cancer therapeutic antibody FL1
Method: single particle / : Anane RF, Whisstock JC, Engelholm LH, Law RHP, Ploug M

EMDB-72761:
Mutant human uPAR bound to the Fab fragment of the targeted cancer therapeutic antibody FL1
Method: single particle / : Anane RF, Whisstock JC, Engelholm LH, Law RHP, Ploug M

PDB-9yc5:
Human uPAR bound to the Fab fragment of targeted cancer therapeutic antibody FL1
Method: single particle / : Anane RF, Whisstock JC, Engelholm LH, Law RHP, Ploug M

PDB-9yc6:
Mutant human uPAR bound to the Fab fragment of the targeted cancer therapeutic antibody FL1
Method: single particle / : Anane RF, Whisstock JC, Engelholm LH, Law RHP, Ploug M

EMDB-56114:
Structure of recombinantly assembled E83Q alpha-synuclein fibrils
Method: helical / : Shafiei N, Mohammed I, Kumar S, Mahul AL, Ekundayo B, Stahli D, Lewis AJ, Stahlberg H

PDB-9tpt:
Structure of recombinantly assembled E83Q alpha-synuclein fibrils
Method: helical / : Shafiei N, Mohammed I, Kumar ST, Mahul Mellier AL, Ekundayo B, Stahli D, Lewis AJ, Stahlberg H

EMDB-63979:
RABV G binding with CTB011 Fab and CTB012 Fab
Method: single particle / : Cao L, Zhang C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more